Bhyb018990.1
Basic Information
- Insect
- Bolitophila hybrida
- Gene Symbol
- -
- Assembly
- GCA_027564075.1
- Location
- JANSTU010050411.1:633-3752[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 5.6 3.4e+02 2.2 0.1 2 23 71 94 70 94 0.88 2 16 3.7 2.2e+02 2.7 0.2 5 23 107 126 106 126 0.85 3 16 2.8 1.7e+02 3.1 0.6 2 11 136 145 135 145 0.89 4 16 5 3.1e+02 2.3 3.0 1 14 168 181 168 190 0.74 5 16 0.39 23 5.8 0.9 3 23 199 220 198 220 0.93 6 16 0.00085 0.052 14.2 1.7 3 23 228 249 226 249 0.95 7 16 2.5e-07 1.5e-05 25.3 0.6 2 23 255 277 254 277 0.96 8 16 0.015 0.88 10.3 3.2 1 23 284 307 284 307 0.86 9 16 2.6 1.6e+02 3.2 0.1 3 12 318 327 317 339 0.78 10 16 0.0078 0.47 11.1 0.1 2 23 358 379 357 379 0.96 11 16 0.013 0.8 10.4 3.8 1 23 386 408 386 409 0.95 12 16 0.00076 0.046 14.3 1.8 2 23 429 451 428 451 0.94 13 16 0.0028 0.17 12.5 2.4 2 23 456 478 455 478 0.97 14 16 0.077 4.7 8.0 2.0 2 23 503 525 502 525 0.95 15 16 1.4 87 4.0 6.5 1 23 594 617 594 617 0.97 16 16 2.6e-05 0.0016 18.9 1.0 1 23 654 676 654 676 0.98
Sequence Information
- Coding Sequence
- ATGGCTACAGAAGTCTACAAGAATTGGCTACTGCAATCGGCAAAACTAGATATATTGCGCTCGATCATAATGGAAAATGTACCAGAAAATCAAATGACATCTACTAAAATTATGATTAAACCGGTAGTCGATGTGACCGCCTGTAAGGAATATCTAAATAATATAGTTTCCCTGGACTATGATTATACTCTAGACTTTGTGACGCCAATAAAATGTTCGATCTGCTACAACTGGCCAATCTCGAATCTCAGTGAATTTCTTGATCACCTTTTAACAGCGCATAACAATTCGAGTAAACTGTACTGTATTGCTTCTAAAACATGTGACGATTCGTTTAAGGATCCTTTATCCTTGTTCAGTCATTTATTTTTTGCGCACGGTTGTACCAGACCATCCGTGTGGCTAAGCTGTACGACCTGCGACAAGACCTACAAGTGTGTCATAGAATTCGGCAAACATGACTGTAACATTGTCGAGCAGCTTCTTGAACCTTACGACGAGTACAAATGCAAGGTGTGTAATAAGCAATTGATATCATTGAAAAGGTACAATTTCCACCATCAGTTTCATTCGAAGAATCCGCGTCCAATGCTATGCTTGATCTGTGAAACAAGATTTTGTGATGAGAATGAATTCTACGAGCATGTTAACTTCGCGCATGAACCATTTTATGAGGTTTGCTGTTCACAGTGCGATGCAGTTTTTTCATTAGATTCAACACTAAAAAAACATTTGAGAAAAGAACATATGGCAAATACCAAAGTTTGTCCATTCTGTGGTAAAACATTTAGTCAACTATACAATCTAAACCAGCACATTATGAAACTGCACAATCCCGAAAGACAATTCTTTGACTGTGACATATGTAAAAAAAGTTTTACCACAAAAAAGAGAATTCGTTTGCACTTTGAGCACGTTCATAGAAAACGAGAACCAAATGAATTACCGATATGTACCGAATGTGGCATCGTGTTTATGGACGTTAACTCATCATTTGATCATGTTTTGAATGAACACGACACAAACATCAAAGACATTGTCTTTACCTACAAGCAGTTTGTGTCAGTACTTGTTTGTGAATATTGCGAACTGAATTTTATTGATGCTAATCGTTTAATAGAACACAGAAAAATACACGAAGGCATTGATAAACCTTATGAATGTAAAGGCTGTGAACAGACCTACGATACGTACAGCAAAATGAAGACTCATAGTTTAAAACATCATATGCCTATGTTTCCTACACATAAGAAAACAGCACATTTAATAAATCCTCAAATTATAAAGTGTCCATACTGTGAATTGGTATTTTGTCAGAGTTGGACATTTACCCATCATGTCGAAGTCATGCATCAACCGAAAAAACAGTGTTCATTTTGTTTAAAAAAAGTGAAAACCACAGTAAATCTTCGAAAACACTTGAAAACTGTTCATCCGGATCTAATGAGGACCAACCGAAGCGATTTATCAGATGAGGAAGAATTATCGGCAGCTGAATTGCCAGTAAGCTGCGTACATTGTCACATGGAATTCGACCAGCTATACCTATTCCTCGAACACTTGAAACAGGAACATAAAGCATTTAACATTGTACAACTTTCCAAGTCAATCAAAGTGGATTTAATTAACATTAGTGAATATATGACATGTCCCATTTGCTCAGAATCTGTTGAGAAAGAATTAATAAAATTACACAATTATAAGTTTCACAGGATGCGGCGAACCAAAATTTCTGAATATGTATTCAATCGATATATGAATGCACACGATGACGGATCTTTCACATGTACTGAATGTAATCAGCACTGTTCAATTCGACGATATGCTCGCAGGCATCTTTTAAAGTTTCACGTAAAAAGTCTTGATACATTTTCCAAAGATTTGGTTGATACAGTCTCTGAAATGCCAGTTCCTAAACCAAAAAAGCCACCTTCAAAGTATGTCAAAAAGCGCAAACCGTACATGTGTTTCTACTGTGACCTTCTATTTGATTCAAAGGCTAATTTATCAAAGCACATCCGTTCTCATTTAAAAAATCCCGAAGGCAACGAGAGTATTGAATATATTGTTCCAAATCCAGATCCGATGTCAGCTGTTATGACTGATGTTCCAATCGAGAAGCCATATCCAAAACACGTAATTGTTCTGCCCGGTCCAGGCAACCCTGATACCGTTTTGAATGGAATAGCAGTTTACACGGTAACTAGAAACCATGACAAAGTCTTTAAACAAAAGTACAACAATGAAATGAAAAAGTCTAAAATGACAAAAAGAGCAAACCATAACAACACAACAACAAACGATGACGTATCGTTTCCCAATGTTGTTTATTATACGGTCGATAAAGGTGATGTAAAGGGTCAAGATGGTGCCATGCAACAAATCGATGATCTTGAGACGTTATCAGCCCTGGACAATTTGGCACTGGCAGCTGCGATGAGTGAAACCGAGAGGGAACTAGAGTCCGCCAAAATTCTGAATATGCCATTCCTACGAAGCTCAAAATAA
- Protein Sequence
- MATEVYKNWLLQSAKLDILRSIIMENVPENQMTSTKIMIKPVVDVTACKEYLNNIVSLDYDYTLDFVTPIKCSICYNWPISNLSEFLDHLLTAHNNSSKLYCIASKTCDDSFKDPLSLFSHLFFAHGCTRPSVWLSCTTCDKTYKCVIEFGKHDCNIVEQLLEPYDEYKCKVCNKQLISLKRYNFHHQFHSKNPRPMLCLICETRFCDENEFYEHVNFAHEPFYEVCCSQCDAVFSLDSTLKKHLRKEHMANTKVCPFCGKTFSQLYNLNQHIMKLHNPERQFFDCDICKKSFTTKKRIRLHFEHVHRKREPNELPICTECGIVFMDVNSSFDHVLNEHDTNIKDIVFTYKQFVSVLVCEYCELNFIDANRLIEHRKIHEGIDKPYECKGCEQTYDTYSKMKTHSLKHHMPMFPTHKKTAHLINPQIIKCPYCELVFCQSWTFTHHVEVMHQPKKQCSFCLKKVKTTVNLRKHLKTVHPDLMRTNRSDLSDEEELSAAELPVSCVHCHMEFDQLYLFLEHLKQEHKAFNIVQLSKSIKVDLINISEYMTCPICSESVEKELIKLHNYKFHRMRRTKISEYVFNRYMNAHDDGSFTCTECNQHCSIRRYARRHLLKFHVKSLDTFSKDLVDTVSEMPVPKPKKPPSKYVKKRKPYMCFYCDLLFDSKANLSKHIRSHLKNPEGNESIEYIVPNPDPMSAVMTDVPIEKPYPKHVIVLPGPGNPDTVLNGIAVYTVTRNHDKVFKQKYNNEMKKSKMTKRANHNNTTTNDDVSFPNVVYYTVDKGDVKGQDGAMQQIDDLETLSALDNLALAAAMSETERELESAKILNMPFLRSSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -