Basic Information

Insect: Bolitophila hybrida
Gene Symbol: -
Assembly: GCA_027564075.1
Location: JANSTU010002960.1:1537-3252[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.22 13 6.6 0.4 2 21 171 190 170 193 0.86

2 11 0.25 15 6.4 1.7 1 23 201 224 201 224 0.90

3 11 0.0097 0.59 10.8 0.6 1 23 230 252 230 252 0.95

4 11 0.033 2 9.2 0.2 1 21 324 344 324 347 0.86

5 11 4.5e-05 0.0027 18.2 2.3 1 23 368 391 368 391 0.90

6 11 1.8 1.1e+02 3.7 2.1 1 23 399 422 399 422 0.87

7 11 0.0012 0.073 13.7 4.1 1 23 430 452 430 452 0.99

8 11 2.4e-05 0.0015 19.0 0.4 3 23 461 481 461 481 0.99

9 11 1.8e-05 0.0011 19.4 1.9 2 23 487 508 486 508 0.97

10 11 0.0091 0.55 10.9 0.5 1 23 515 538 515 538 0.94

11 11 0.0013 0.08 13.6 2.3 3 23 547 568 542 568 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.22	13	6.6	0.4	2	21	171	190	170	193	0.86
2	11	0.25	15	6.4	1.7	1	23	201	224	201	224	0.90
3	11	0.0097	0.59	10.8	0.6	1	23	230	252	230	252	0.95
4	11	0.033	2	9.2	0.2	1	21	324	344	324	347	0.86
5	11	4.5e-05	0.0027	18.2	2.3	1	23	368	391	368	391	0.90
6	11	1.8	1.1e+02	3.7	2.1	1	23	399	422	399	422	0.87
7	11	0.0012	0.073	13.7	4.1	1	23	430	452	430	452	0.99
8	11	2.4e-05	0.0015	19.0	0.4	3	23	461	481	461	481	0.99
9	11	1.8e-05	0.0011	19.4	1.9	2	23	487	508	486	508	0.97
10	11	0.0091	0.55	10.9	0.5	1	23	515	538	515	538	0.94
11	11	0.0013	0.08	13.6	2.3	3	23	547	568	542	568	0.92

Sequence Information

Coding Sequence: ATGTCTAAACTACAACAAAATATTCCATCAACCATTAAATTAAAATCTGGGGCAGTAATAACCAAAGATCCCCTTAGAGTAGTTAAATTAATCAAAGACAATTCGCAAGTAAATAATGTAGTGCCTATCAGGCCTGACAAGTACATCAAAGTGTCCAATGTCTACTATATACCTACTAAAGTATCGGTAACTCCAAAAAATCCAGCGGAACCGACGACAACAAAGTTTTCACAAGATCCAGTTAATCTGCAACTTGAACCCAATAAAATTGAGAATGCGTCAACAATATCAGAAGTAAATCGTCTCATCGCTGACAATAGCTCGTATTCTGTGCATCAGCAAAATGAAACATGCATAAATCCACTAGAACTATCAAAAATCATCCCAGAAGAAGAAAACACCAACGATAAATCATCACACTGCATTAATCTAGAAATCGAACCGACTACAACGGATTCTGAAAATGAGCCTAATATTGATTACTACGAAGAAAATTGTAACACTACTTTAAAGTGTCGCATGTGCTCAGAGGAATTCCCAACCAAATCAATGCGGTTATCGCACGAGTCAGACGTTCATATGGATAAATCCACGATGAAGTACCAGTGTGATAAATGCGATCACAGTGGATTTCGAAGTATTATACATCTAGCCAATCATCTAAACGGACACGAAGGCTTCAAACCTTTTCTATGTTACATCTGTGGTTTGGATTTCACAAATATTCGCAGTATGAAATATCATGTTAACTCGCACGCTCGGACACAGAAACGACTCGAACAAAAAGCAATCGACGATGCCATCGAATTGTCCAAAAGACCGGTTTGCTGTGAATGTGGCAAAACATTAGACAACCTTTGTGGCCTGTTCAAGCGAATTTTTCATCTAATCGAAAACAAACTACTGTGCACGGAATGTGGTGAGAATCGCAGAAACTACAATGATTGTACATTAAACGATAAAACCGAATTCATGTGCATTATATGTGACCGTGGATTTCCATCAAGAGCAGCGCTACAATCACACGGTTACTATAAGCACACAGAAAATGAAAAGTATAAATTACGCCAGCTCAGAAACTCTAAAAAAGTACATATGGATTTTTTTTGCAATCTCTGTAATAAAAGTTATAGCAGCCAGAAGAATCTAAACGCACACAAATCGTTCATACATGCTGATATACATAAATCTGTGCATAAATGTCGATTCTGCGATCTGGAGTTTGTTCGCTTATTCGACAGAGGCACACACGAACGCGATACACATCGAGATCCATTCACATTAATGTATAAGTGTCATCAATGCGAGCGTAGCTACAAAATGATACAAAATTTATTTGATCATCGAAAGGTTCACGATGCTGGCTCAGGTTATAAAGGTTGTGAGATATGTGGAAAGACATTCGGGCAATTTGCTACACTAAAATTACATATGAAGGAACACATTGAAGGTAAACTGAAATGTACATTGTGTGAGAAATCATATGATTCCCAGAGCAAACTGAAGAAACACTTGGAACGTCACAAAGAAAACAGGAAACGCTTCAAATGTGAACGGTGTCCAAGCAGCTATGTGGAAGTTTCTGATTTGAATAGACATCGGGCATACAAACACAAGGAAATCAAGTGTCAATGGCTGTGCCTGGTATGCGGTAAGGCACTCTACGACAAGAAAGACTTTCGTAGGCATATGAAATTTCAGCATGCAAATAAATAA
Protein Sequence: MSKLQQNIPSTIKLKSGAVITKDPLRVVKLIKDNSQVNNVVPIRPDKYIKVSNVYYIPTKVSVTPKNPAEPTTTKFSQDPVNLQLEPNKIENASTISEVNRLIADNSSYSVHQQNETCINPLELSKIIPEEENTNDKSSHCINLEIEPTTTDSENEPNIDYYEENCNTTLKCRMCSEEFPTKSMRLSHESDVHMDKSTMKYQCDKCDHSGFRSIIHLANHLNGHEGFKPFLCYICGLDFTNIRSMKYHVNSHARTQKRLEQKAIDDAIELSKRPVCCECGKTLDNLCGLFKRIFHLIENKLLCTECGENRRNYNDCTLNDKTEFMCIICDRGFPSRAALQSHGYYKHTENEKYKLRQLRNSKKVHMDFFCNLCNKSYSSQKNLNAHKSFIHADIHKSVHKCRFCDLEFVRLFDRGTHERDTHRDPFTLMYKCHQCERSYKMIQNLFDHRKVHDAGSGYKGCEICGKTFGQFATLKLHMKEHIEGKLKCTLCEKSYDSQSKLKKHLERHKENRKRFKCERCPSSYVEVSDLNRHRAYKHKEIKCQWLCLVCGKALYDKKDFRRHMKFQHANK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -