Basic Information

Insect: Bolitophila hybrida
Gene Symbol: RREB1
Assembly: GCA_027564075.1
Location: JANSTU010048218.1:1-7315[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00011 0.0069 16.9 0.8 1 23 147 169 147 169 0.99

2 14 0.00025 0.015 15.9 0.4 1 23 178 200 178 200 0.98

3 14 6.2e-05 0.0037 17.8 7.4 1 23 206 228 206 228 0.99

4 14 0.067 4.1 8.2 3.1 2 21 328 347 328 348 0.93

5 14 3.4 2.1e+02 2.8 0.7 1 11 397 407 397 417 0.82

6 14 0.009 0.55 10.9 0.1 1 23 556 578 556 578 0.97

7 14 3.3e-05 0.002 18.6 0.9 1 23 587 609 587 609 0.99

8 14 0.00032 0.02 15.5 2.1 1 23 615 638 615 638 0.97

9 14 0.00097 0.059 14.0 2.1 1 23 979 1002 979 1002 0.95

10 14 0.00037 0.022 15.3 0.3 2 23 1275 1296 1274 1296 0.97

11 14 0.15 8.9 7.1 6.3 1 23 1302 1325 1302 1325 0.97

12 14 3 1.8e+02 3.0 3.9 1 23 1387 1410 1387 1410 0.90

13 14 0.0086 0.52 11.0 0.5 3 23 1456 1476 1454 1476 0.96

14 14 0.047 2.8 8.7 5.2 1 23 1482 1504 1482 1504 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00011	0.0069	16.9	0.8	1	23	147	169	147	169	0.99
2	14	0.00025	0.015	15.9	0.4	1	23	178	200	178	200	0.98
3	14	6.2e-05	0.0037	17.8	7.4	1	23	206	228	206	228	0.99
4	14	0.067	4.1	8.2	3.1	2	21	328	347	328	348	0.93
5	14	3.4	2.1e+02	2.8	0.7	1	11	397	407	397	417	0.82
6	14	0.009	0.55	10.9	0.1	1	23	556	578	556	578	0.97
7	14	3.3e-05	0.002	18.6	0.9	1	23	587	609	587	609	0.99
8	14	0.00032	0.02	15.5	2.1	1	23	615	638	615	638	0.97
9	14	0.00097	0.059	14.0	2.1	1	23	979	1002	979	1002	0.95
10	14	0.00037	0.022	15.3	0.3	2	23	1275	1296	1274	1296	0.97
11	14	0.15	8.9	7.1	6.3	1	23	1302	1325	1302	1325	0.97
12	14	3	1.8e+02	3.0	3.9	1	23	1387	1410	1387	1410	0.90
13	14	0.0086	0.52	11.0	0.5	3	23	1456	1476	1454	1476	0.96
14	14	0.047	2.8	8.7	5.2	1	23	1482	1504	1482	1504	0.99

Sequence Information

Coding Sequence: GCGATGATAACCGCCAGGACCAATCCATTAGCAGCCACCACCAAAATGGAACGTCGTACAAGCACTAATTCCGAGTCGTCCGTCGAACCGATGGACATCAGTGGTAAGACGACCGGTAGTACAGATCCGAACTCTTCGTCCATGGCCATCAAGTCCGATCATATAGACTCGGACAACTTTGAGTCCGATCGCGATGAGTCGGAACAAAATCACCACTTTGTTCGACGTGAAAACCTGCGTCAACTTGAAGCCAGCATGATGATTATGCGTAAAAAGTATCGATTGAGCATGCCATACAAAAACAACAACAACAATTTGCAATACAGCAACTATGACAAGATTGAAAATCTGTCGCGTAATCATCATTCAACAGAAAATTTTGCATCAGATGCTAACGATACCAGCCTAGACATGTCCAGCTTTCGAACAGACGTTAAGTACACGTGTCCAATATGTGAACGTATCTCTGTAACCCAGCACGAGTTCACTGAGCACATTCGCAGCCATAACAATACCGAAGACACACAGAATTTCACGTGTCAGATTTGTTTCAAGGTCCTATCGTCCTCCTCATCGCTGGACCGCCATGTTCTTGTGCACACCGGTGAACGGCCGTTCACCTGTAAATTCTGCCATGTCACTTTCACCACCAACGGCAATATGCATCGACATATGAGAACCCACAAACAGCGTGACGGAACTGGTGAGAACTACGAAAGTGATGCATCTACAGAGTCAAGCGCTGGCAGCACCAACAACAATTACACTTCGCATCCGGAGTCCAAGCGAAAGATAAGCGATGACGACAGCTCAGCAATGAAACGAAGACTGAAGACGATCAATAACAATAATAACAATAATATTGTTCAAAATAATTTAACTGGCCAGCGTTTTTGCTGTCCCGTCTGTATTCGCAGTGATTTTCCAAATATGCTTACACTTGAAAATCACATGGATAAAGAGCATCCAAGCATTCAGGCAAAATGTCGTTACTGTGAATTGGTCTTTAAAAGCCACAAGGCATTGAATGCCCACAAATGCAGTGCATCTTATAAAAATGGTAATACACAGTCGGTAACTCATGGTTTTGGTGATATGACATTTGTGGATTTCTCCAGTGACAAATTTCCACAGATTGCACGTTCAATGTGTGAGCAGAGCATGCATACACCAATCACTAATCAAAAGTTCGAATGCCCCAAGTGCTATCGAGCATTTCCATGTGCCAGTTCTGTAGACATTCATGCCAAAAATTGTGGTACACCAATCTCAGCAGCAGTTTCTGGTGATAGTCCACAGGATTTCTCAATTCGGAAACGTCAGTCTAGTGAAACCTCAGATGAGGATGCCAGACGTGATGATTTCTTTGCTCATCTTGATTTGAAAAATAAAATCACTCCTGTGTCATCGTTTAATACCAGCATGAATGATTCTTTGTTGTCGGCATACGCATCAGACAAATCACCGAATATTAAGCAGGAACGAAGTACACCACTTCCTTATCATGACACCAAAGATCTGGCTGATATTCAGTCTATGATTAATATTACATCATCTGGTGGATTTATGCGCCAACTAGACAAATCAATGACACCGAAtaaggatgatgaagaggtacaagatgcatttacatcagaatttagaaaaatgaaacttcgcggtGAGTTTCCTTGTAAATTGTGCACGGCAGTATTTCCCAATTTGCGAGCACTTAAAGGTCACAATCGTATCCACTTGAGCTCAGCTGGTTCAGGACCATACCGATGTAACATGTGCCCATACTCAATACATGATAAGGCAGCTCTAATTCGTCATATGCGTACCCATAACGGAGATCGTCCCTACGAGTGTGGCATCTGCAATTATGCCTTTACAACAAAAGCTAACTGTGAACGACATCTACGCAATCGCCATGGTAAGACCACTCGAGATGAAGTAAAACGTTCAATTATCTATCATCCGTCCGAAGACTCGAGCTGTGACGATCCGGTCAAGAAGATGCAGATCTATAATTCTTCATTTGACGATGATGAACACACACCGAAAGATCAAAGCACTCCTGTGTCACATCTTAAAGAAATGCTTAACGTTGATAGAGAACGAAACTTTGGTGTAAAAATTCAAGTGAAGAGTTTGGATCAACTTAAGAAACCGATTTACGATGATGACTTAGACAAAGACATTGAGGTTGTTCCAGTAAACTCTGGCTTTCGACCTATGGATTTAAGCATGGATGCCTTAGATCTAAGCAAGAAGTCTAACTCGATGGTTGACTATAAAGATGAAGAAGATGATGAAGATGATGAAGACGAAGAAGAAGATAATTTGCCCAAGATCAATATGGCCATGTTTGAAAAAAATCAACAATTGCTAATGGCACAACAGCAGTTCCTCAGTGAGGCATTTCCCAAAATGGATCCATCCCATTATTTTCAATTGTCTCAGCTATATCGTAACTTTATGTTTCCCACCGGTGGTTTTCCTATGCATCCACTATTCCTGCAGAACTCCTTTCTTCCACCACCACAACAACCTTCACAGCATTCCAACGAATTCAAAGACATGTTAAGAGCACCACAGGCGCCTCCAATTTTTCCTTCTGGTATGATGATAAACCCAATATTTCAATCACCATCGGCTGCACAGTCTCTGCAGTCTCGTAACAACATGATGAACATGCCAAAACAAGAAGTAATCTCAAGACCATCCTCACCAGCATCAGCATCTGCAGCTCAAATACCACAGAGTGTCTCTCAGATGCAACACCAGAGTCCAATCACTGTACAACCACTTCATTCGAATACTACACTGCATAACTCAAGCTCACCACATCCAGTTGGTCAAGATCATAGTCCTGGACCAGTTAAAATGGTTATCAAGAACGGTGTTCTAATGCCCAAGCAGAAGCAACGTCGCTACCGAACCGAGCGTCCGTTTGCCTGTGAGCACTGCTCGGCCAGATTCACGTTGCGCTCAAACATGGAACGGCATATCAAGCAACAACATCCCCAGTACTGGGCTCAACGACAGCGTAGTGGCCATAATATCATGCGACGTAGCAGTGGTGCCGGTAATCCTAACCATCTCAACGTATCCGTCCCTCAGATACCGACCATACCAAATCAGCTAAGTGCAATTTCTGACCAGGTCAAATACGCTATTCTTGCTCAACAGTTGAAAAGTCGCGGTGAAAAGTCAGCCGACTATTTCGGCAATTCAAACATTGCTCAAAACTATCACATTAACAATAATCTAAATAGCATCAATAATAATAATGTGGAGCCATTGCCGCAAGACGATGATGATAATGATTCCGAGCTAGTTATTGACGAAGACAGCGAGCCCGAGGATTTATCAAGCAAATCTCCGGAACAACTGCCACAAACACCAACTGGCGCTGGCGAAGTAAATATGGCTGCCAAGAAAGTTGCCGAAACAATTCTGGAGCATGCTATGCGAAACAGTTGTGCGCCCACGGTAAGCCACTCAAATGAGGCTAAAGATTTTGATTTGAAGATCTCACCGAATTTGATTGCTAGATCCGAGCATGTCAACAAATATCTTAAAGATGTACATCAAACATCCTACAAGGAAGAAGGTGATTTGGTCTCAGTCTCAAAACTTGTCGATAACGCTACTAACGCAATGAGTTTTGGAAACTATTTCCGACCAGATCCGATTAATCTACACGAGCACAGCGACGAAGAAGGTCTCGTTGCATCAGGAAGTGCATCCGAGAGCAATCACTCGGGTACTGAAGACACTGCTAATCCACAACAATGCAAGAAAAAGTCTGCATACAGCATGGCTCCGAATCGTGTGTCCTGTCCTTATTGCCAACGCATGTTCCCATGGACTAGTTCGCTGCGCCGTCACATATTAACCCACACTGGTCAGAAGCCATTCAAATGCTCACATTGTCCATTGCTTTTCACCACCAAAAGCAATTGTGACCGTCATTTATTGCGCAAGCATGGAAATGTTGAGTCGGCTGTATCCTTGTACGTTCCAATCGATGATATGCCAGAGCCAATAAAAGAGCCAGTCGTTGAAATTACCGTTGCCCCACCAGCACAACCACGTACACCCTCAGTTCAGTTAAATATTCCAGTGCTAAAGAACGAACAACCTCAAAATGTTACCAGCACCGATTTGCCATTCAAGTGTCACCTTTGTGACGGATCCTTTACCGAGCGCATGACTTGCCTGGAGCACATCAAGAACATGCACACCCAAGACTTTGCATTACTAATGGCCAAAGGTGCCATCGAAGCAGACACCGATCATCAGATGGCCTCCGCCGAGGACGAGGACAAGCTAGAAAACCGTGGCAAATACCCGGACTACGCAAATCGAAAGGTTATCTGTGCATTCTGTGTACGTAGATTCTGGTCCACTGAAGATCTACGCCGTcacatgcgtacccattctggagaacgtccattccagtgtgacgtctgcATGCGTAAGTTTACGCTAAAACACAGCATGTTGCGTCACCAAAAGAAGCATACGCATGCCAACCAAATGAACAATGCTAACAATAGTGCATCAGACATGTCCGACGATGAACAACCTACCAGCATGGTTATGCCTAATGTATCAAAAATGCTCAAGATTCCCGATCTGCTGCCCAAAGAACTCTCCTGGAAGCTTCAACAAAACGCCGAGCTGTTAAAAGATAAATTTGGTAAACCCGGTGGCTTTGAAACCTCCGAACTCATTGGCAACTTGTTGGGTATAAGCGATCAGGGTATTCTCAACAAGGTGCTGCTTTCGTCAGCCGATGAAGCAGCCAAACTATTGGGCGTCGAGAAATGA
Protein Sequence: AMITARTNPLAATTKMERRTSTNSESSVEPMDISGKTTGSTDPNSSSMAIKSDHIDSDNFESDRDESEQNHHFVRRENLRQLEASMMIMRKKYRLSMPYKNNNNNLQYSNYDKIENLSRNHHSTENFASDANDTSLDMSSFRTDVKYTCPICERISVTQHEFTEHIRSHNNTEDTQNFTCQICFKVLSSSSSLDRHVLVHTGERPFTCKFCHVTFTTNGNMHRHMRTHKQRDGTGENYESDASTESSAGSTNNNYTSHPESKRKISDDDSSAMKRRLKTINNNNNNNIVQNNLTGQRFCCPVCIRSDFPNMLTLENHMDKEHPSIQAKCRYCELVFKSHKALNAHKCSASYKNGNTQSVTHGFGDMTFVDFSSDKFPQIARSMCEQSMHTPITNQKFECPKCYRAFPCASSVDIHAKNCGTPISAAVSGDSPQDFSIRKRQSSETSDEDARRDDFFAHLDLKNKITPVSSFNTSMNDSLLSAYASDKSPNIKQERSTPLPYHDTKDLADIQSMINITSSGGFMRQLDKSMTPNKDDEEVQDAFTSEFRKMKLRGEFPCKLCTAVFPNLRALKGHNRIHLSSAGSGPYRCNMCPYSIHDKAALIRHMRTHNGDRPYECGICNYAFTTKANCERHLRNRHGKTTRDEVKRSIIYHPSEDSSCDDPVKKMQIYNSSFDDDEHTPKDQSTPVSHLKEMLNVDRERNFGVKIQVKSLDQLKKPIYDDDLDKDIEVVPVNSGFRPMDLSMDALDLSKKSNSMVDYKDEEDDEDDEDEEEDNLPKINMAMFEKNQQLLMAQQQFLSEAFPKMDPSHYFQLSQLYRNFMFPTGGFPMHPLFLQNSFLPPPQQPSQHSNEFKDMLRAPQAPPIFPSGMMINPIFQSPSAAQSLQSRNNMMNMPKQEVISRPSSPASASAAQIPQSVSQMQHQSPITVQPLHSNTTLHNSSSPHPVGQDHSPGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHIKQQHPQYWAQRQRSGHNIMRRSSGAGNPNHLNVSVPQIPTIPNQLSAISDQVKYAILAQQLKSRGEKSADYFGNSNIAQNYHINNNLNSINNNNVEPLPQDDDDNDSELVIDEDSEPEDLSSKSPEQLPQTPTGAGEVNMAAKKVAETILEHAMRNSCAPTVSHSNEAKDFDLKISPNLIARSEHVNKYLKDVHQTSYKEEGDLVSVSKLVDNATNAMSFGNYFRPDPINLHEHSDEEGLVASGSASESNHSGTEDTANPQQCKKKSAYSMAPNRVSCPYCQRMFPWTSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAVSLYVPIDDMPEPIKEPVVEITVAPPAQPRTPSVQLNIPVLKNEQPQNVTSTDLPFKCHLCDGSFTERMTCLEHIKNMHTQDFALLMAKGAIEADTDHQMASAEDEDKLENRGKYPDYANRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCDVCMRKFTLKHSMLRHQKKHTHANQMNNANNSASDMSDDEQPTSMVMPNVSKMLKIPDLLPKELSWKLQQNAELLKDKFGKPGGFETSELIGNLLGISDQGILNKVLLSSADEAAKLLGVEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -