Basic Information

Insect: Bolitophila hybrida
Gene Symbol: -
Assembly: GCA_027564075.1
Location: JANSTU010045944.1:15332-20675[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0016 0.099 13.3 0.5 1 21 253 273 253 274 0.92

2 13 0.088 5.3 7.8 6.9 1 23 347 369 347 369 0.93

3 13 0.023 1.4 9.6 0.1 3 23 373 394 372 394 0.96

4 13 0.02 1.2 9.9 6.3 1 23 406 428 406 428 0.98

5 13 0.039 2.4 8.9 0.5 1 23 441 464 441 464 0.91

6 13 0.031 1.9 9.2 0.5 1 23 499 521 499 521 0.96

7 13 4.4 2.7e+02 2.5 1.1 1 23 525 550 525 550 0.93

8 13 0.0045 0.27 11.9 1.2 1 22 556 577 556 577 0.96

9 13 0.00023 0.014 16.0 2.9 1 21 584 605 584 606 0.94

10 13 2.1e-05 0.0013 19.2 0.4 1 23 612 634 612 634 0.97

11 13 8.9e-05 0.0054 17.3 1.8 1 23 640 662 640 662 0.96

12 13 0.00015 0.009 16.6 3.0 1 23 668 690 668 690 0.98

13 13 0.0019 0.12 13.1 6.3 1 23 696 719 696 719 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0016	0.099	13.3	0.5	1	21	253	273	253	274	0.92
2	13	0.088	5.3	7.8	6.9	1	23	347	369	347	369	0.93
3	13	0.023	1.4	9.6	0.1	3	23	373	394	372	394	0.96
4	13	0.02	1.2	9.9	6.3	1	23	406	428	406	428	0.98
5	13	0.039	2.4	8.9	0.5	1	23	441	464	441	464	0.91
6	13	0.031	1.9	9.2	0.5	1	23	499	521	499	521	0.96
7	13	4.4	2.7e+02	2.5	1.1	1	23	525	550	525	550	0.93
8	13	0.0045	0.27	11.9	1.2	1	22	556	577	556	577	0.96
9	13	0.00023	0.014	16.0	2.9	1	21	584	605	584	606	0.94
10	13	2.1e-05	0.0013	19.2	0.4	1	23	612	634	612	634	0.97
11	13	8.9e-05	0.0054	17.3	1.8	1	23	640	662	640	662	0.96
12	13	0.00015	0.009	16.6	3.0	1	23	668	690	668	690	0.98
13	13	0.0019	0.12	13.1	6.3	1	23	696	719	696	719	0.95

Sequence Information

Coding Sequence: ATGGACGCAATGGATTGTGATGATTTTGAACTAGACCTGGATCCGAATGGTGTTTGTCGCATTTGTATGTCTGAAACGAATAAACTACTAAATTTAAATTCACATTCGGTGGTCGATGGTTACGTGACTTCAGTACAGGAAATGGTTCGTTGCTGTCTGGATATAAAAATTATTATGGCAGATGGATTACCCGTAAAAATATGTGACATTTGCAAGCGAGATATTACCAGTTTCTATGTGTTTAAGAAAAAGTCCCGACGTACCGATGAAGTGCTCAAAAAAGCATTTAAAATTGTCGAATCGGTAGAAGAAATTGTACCAAAAATCGCAGTCAAAGAAACAACCACATCTTATACTCAAACCGAAGCAGAAAAAGCACCTCCTATTGTTGAGAATGCAGCAGCTGCTACACAAACACTGATCGAAGAAGATCCTGTTCCCGTGCTAACTGTCAATGCAGAAACTCAATATGAACTACAAACACAACAACAAGCCAAAGAAAAGAATATACATAAGACAATTATCAAAGAAGAACTGATTCAAATGTTAGAAGACCCCATGACGGATGATATAGATGATGTGGCTGATGAGGAAAATGTATGCGATGAAATAATACTTATGCATGCTGAACCTGATGAGCAAGAATATGAGAATTCCGAATTTCAGCATGAAGATGAAGAATTGTACTCAAATTTCTACGAAGAGGAATTAGTTGAAGATGTTAAGCCGATTGTAAAAAACGATCCTGATTTTCTGTATGAATGCGAAAAATGTGGTAAAGTTTTTCAAAAATTAAGTACACAAAATAATCATGCGAAAAGATGTAATGCAAAGGCGCTGAAAGATATGTCTCCAGAACCGTCCCTGGGCTATGAAGACGAAGAAGCTGACATTGTGCAAGAAGATCAAGTTAGTGAAGCAAAGTACGATGAGGATAATGATGAAGAAAATGAAACTGTAGAAGATGCATCTGATTCGGAAATATTTAATATTGATTTAAGCGAAGCAATCTCCACAACAACCGTTATTCAAAACTACCATCAATGTGACCACTGTAACTTGAAATTTACAGATCGGTGGCAATACATTTCTCACTGTAAAATTCATACGTCTTTCTGTGGCAAGTGCGAGCGACTTTTTGCAGACAATGATGCATACGACGAGCATATGCGTGAGGTACACACAAAACAGCCCACACTTACCGATGGCGAGGAATATCATTGTACACACTGTGACAAAACCATGAAAAGTATGAGCCTATACACTATGCACATGAAACTGCACGATAGCATGTACGTAATCTCAAACTATCTAGAGTTCTATCCATGTCACAAATGTCGCATAATTTTTGCAACGACAGAAGAAATGAGTACGCATACAGATGAGATTCACAAACCACTCAAAGCGGAGCTTAAATTTGTTGAAGATGACGCATCCTGTACGGATTATCAGTTTTTGGACGATGACAAACCAGACATGTACGAAGATGGTGAGTACACGTGTGGTGTTTGTAATGAAACACATGAAAATGCAACCACACTGAAGCAACACATGGTCGGACATATGACCACGTTCTCGTGTCCGTTTGAAGCATGCGGTTGTCAGTACGAGCTATTTTCACGTCTAAGTCTGCACATTATGACAAAGCACGTGAACGCACAGAGTCACACATGCAAACATTGTGAGATGCAGTTTGAGTCCTATGACGATGTCCAGTGGCACATAAAAACTAGTTGTGAACAGCGTAAATTTGCATGCGACAATCATTGTGACAAACGATTCTACTCGAAAAAGGCTCTCCAGCATCATTTGCGTAATTTGAACGGAAAGAAATTCATTTGCCAGTCGTGTGGCAAAACATTTGGCCAACAGGGTGAACTGACTATACACAATCGATCCCACACCAATGAGCGACCCTTTAAGTGTACAGTATGTGGTAAAGCATATAAGACGTGTAGCATGCGCACAGCTCATATGGACGCACATATTCCTGGAAAAACATTTGAGTGCACTATTTGCGATAAGAAACTCCAGACACGCACCAGCTATCGCAACCACATGAAGCGCCACACTGAGGAAAAGAAGCATGAATGTTGGCTGTGCAATAAAAAGTTCTTTACCAAGTACCACCTGAAATTACATACCTCCAAAATTCACGAGAACGTAAAGAGCAAGTTTATGATCATCGATACCGCTGATGCATAA
Protein Sequence: MDAMDCDDFELDLDPNGVCRICMSETNKLLNLNSHSVVDGYVTSVQEMVRCCLDIKIIMADGLPVKICDICKRDITSFYVFKKKSRRTDEVLKKAFKIVESVEEIVPKIAVKETTTSYTQTEAEKAPPIVENAAAATQTLIEEDPVPVLTVNAETQYELQTQQQAKEKNIHKTIIKEELIQMLEDPMTDDIDDVADEENVCDEIILMHAEPDEQEYENSEFQHEDEELYSNFYEEELVEDVKPIVKNDPDFLYECEKCGKVFQKLSTQNNHAKRCNAKALKDMSPEPSLGYEDEEADIVQEDQVSEAKYDEDNDEENETVEDASDSEIFNIDLSEAISTTTVIQNYHQCDHCNLKFTDRWQYISHCKIHTSFCGKCERLFADNDAYDEHMREVHTKQPTLTDGEEYHCTHCDKTMKSMSLYTMHMKLHDSMYVISNYLEFYPCHKCRIIFATTEEMSTHTDEIHKPLKAELKFVEDDASCTDYQFLDDDKPDMYEDGEYTCGVCNETHENATTLKQHMVGHMTTFSCPFEACGCQYELFSRLSLHIMTKHVNAQSHTCKHCEMQFESYDDVQWHIKTSCEQRKFACDNHCDKRFYSKKALQHHLRNLNGKKFICQSCGKTFGQQGELTIHNRSHTNERPFKCTVCGKAYKTCSMRTAHMDAHIPGKTFECTICDKKLQTRTSYRNHMKRHTEEKKHECWLCNKKFFTKYHLKLHTSKIHENVKSKFMIIDTADA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -