Basic Information

Insect: Bolitophila hybrida
Gene Symbol: -
Assembly: GCA_027564075.1
Location: JANSTU010033296.1:6263-8231[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2e-06 0.00012 22.5 1.9 1 23 193 215 193 215 0.98

2 12 0.0074 0.45 11.2 9.6 3 23 221 242 220 242 0.95

3 12 0.45 27 5.6 0.1 2 23 246 267 245 267 0.84

4 12 0.25 15 6.4 0.2 2 23 277 298 276 298 0.84

5 12 0.00029 0.017 15.7 1.3 1 23 304 326 304 326 0.99

6 12 0.0031 0.19 12.4 0.9 1 23 332 354 332 354 0.98

7 12 0.00016 0.0099 16.4 0.4 3 23 371 392 369 392 0.95

8 12 0.0024 0.14 12.8 0.7 2 23 410 432 409 432 0.96

9 12 0.0045 0.27 11.9 1.6 6 23 451 468 447 468 0.94

10 12 0.00066 0.04 14.5 4.0 1 23 471 494 471 495 0.97

11 12 0.17 11 6.9 0.3 1 23 502 525 502 525 0.91

12 12 0.35 21 6.0 0.3 1 22 531 552 531 552 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2e-06	0.00012	22.5	1.9	1	23	193	215	193	215	0.98
2	12	0.0074	0.45	11.2	9.6	3	23	221	242	220	242	0.95
3	12	0.45	27	5.6	0.1	2	23	246	267	245	267	0.84
4	12	0.25	15	6.4	0.2	2	23	277	298	276	298	0.84
5	12	0.00029	0.017	15.7	1.3	1	23	304	326	304	326	0.99
6	12	0.0031	0.19	12.4	0.9	1	23	332	354	332	354	0.98
7	12	0.00016	0.0099	16.4	0.4	3	23	371	392	369	392	0.95
8	12	0.0024	0.14	12.8	0.7	2	23	410	432	409	432	0.96
9	12	0.0045	0.27	11.9	1.6	6	23	451	468	447	468	0.94
10	12	0.00066	0.04	14.5	4.0	1	23	471	494	471	495	0.97
11	12	0.17	11	6.9	0.3	1	23	502	525	502	525	0.91
12	12	0.35	21	6.0	0.3	1	22	531	552	531	552	0.93

Sequence Information

Coding Sequence: ATGCCGACACACTGTTGCGTAAATGGTTGTAATACTAACAACTCTATTGTTATTCAAAGAACAATATCATTTCATAAAATCCCCAAAAGTAAAAAGTTACTGGCATTATGGCTAAACGCATTAAAAGTTCTGAATAATCAACATACAATCGAACAAAACGGACGTATGTGCTCGCTACATTTTTCTAATGATTCTTTTGTTAGTACATTGAAACCAAATAAAAAACGCCTCAATTCAACGGCTGTGCCATGTTACTTCCAAATAACACCTCCAAACGAAAGTATAAAAGTAGAAGTACTGATGGACTGCGATGTGGTGAATGTGGTTCCTAGAATTAAGACCATACGATATCCTGGTGATATATCTGTTGACGATGAAATGTCTGAAGCTAATGTCATGTCAGCACTAAAGTTGCTCAAGGACAACATTAAAAAGAATAGCGCTACCATTAATCGAATGAGAGTTGAAAATAAACGCCTTACTGACAAGTTCAAGGATTTGACCGCTCAGGTGGCCGTACACACAAATAATGGACGAACAATTCCTCTCATGTTTGAGATTCCAACTTTTTCCGAATTTACTTGTGACTACTGTTCAAAAAAGTTTACTGATAAGGAAGTACTCCGAAGACATTTGCGCGGACATATCGATTTGGCCTTCTGTAAAATATGCAATAAAAAATTTGAACACAGGTCTCAACTGCATAAACACAACCGTCATTATCACGCCCTCGTCGAATGTACCGTTTGTCAGAAAGCCGTAGTTCGACGAGAATTATACTCGCACATGGTGAGCATTCATGGAGTTAAACCAAGCCTCAAACCGATTGTCTGTAAATTATGCGGCTCCAGAATGTTAACAGAAGAGAGTTTAGAGAAGCACATGCTTCGTCACACCACTTCGAAACCATTTAAATGCCCCTTTTGCAAAATGGAATTCTTTACAAATAAACAATTGCAACCACACATTCGTGTACACAATGCTGAAAAGAATTTTGTATGTCATTTATGCGGTGATCGTTTCTCGTTAGTGGTTTCGTTACGAAGGCACGAACTTACACATCAGAATGTAAAATCCAAACGAAAGACCAATGATACGGTGCCGATTAACTGCCAAATCTGCGGTGCAGTCTATCAGCATTCTAGATCTCTGACCAAACACATGGCAGTTATGCACGGAATGCAAAAAACAGTTAGTGGATTCAATATTGATACAGAATTAAAGGTACAGTGTCCAGAGTGCGATAGTTGTGTGTCCAATCGGAATTTGCTCTATACACATATATTAAGTAATCATCCAGAGCAAAAGGATATTTTGTGGCAGCATGTAAAGAACACTGTATGCATCAGCTGTCATGCGGTATTTAAGTCCAAACAGGAATTGCTAAAGCATAGAAGGGTTCACATACGATTTCAGTGTGACATTTGCAGACGAAGATTCCGTCTACAGGAGACCTTGGATCGACACAAACAGACGACACACCACTCAGATAATGCAGAACCATTCAAGTGTGACATTTGTAAATTAAGTCTTTCTGATGAAATAACTATGGATCAGCATAAACAAGAATCTCACTCAGTTGTAGTATCTTTTCTATGTCAGGTATGCAATGTGGATTTTCTTGACAATGAAAAATTCAACAATCATTTGCGAACATGTCGGAGAATAAAAGTTAAATAA
Protein Sequence: MPTHCCVNGCNTNNSIVIQRTISFHKIPKSKKLLALWLNALKVLNNQHTIEQNGRMCSLHFSNDSFVSTLKPNKKRLNSTAVPCYFQITPPNESIKVEVLMDCDVVNVVPRIKTIRYPGDISVDDEMSEANVMSALKLLKDNIKKNSATINRMRVENKRLTDKFKDLTAQVAVHTNNGRTIPLMFEIPTFSEFTCDYCSKKFTDKEVLRRHLRGHIDLAFCKICNKKFEHRSQLHKHNRHYHALVECTVCQKAVVRRELYSHMVSIHGVKPSLKPIVCKLCGSRMLTEESLEKHMLRHTTSKPFKCPFCKMEFFTNKQLQPHIRVHNAEKNFVCHLCGDRFSLVVSLRRHELTHQNVKSKRKTNDTVPINCQICGAVYQHSRSLTKHMAVMHGMQKTVSGFNIDTELKVQCPECDSCVSNRNLLYTHILSNHPEQKDILWQHVKNTVCISCHAVFKSKQELLKHRRVHIRFQCDICRRRFRLQETLDRHKQTTHHSDNAEPFKCDICKLSLSDEITMDQHKQESHSVVVSFLCQVCNVDFLDNEKFNNHLRTCRRIKVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00211672;
90% Identity: iTF_00211672;
80% Identity: iTF_00211672;