Basic Information

Insect: Bolitophila hybrida
Gene Symbol: -
Assembly: GCA_027564075.1
Location: JANSTU010051175.1:8961-10631[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1 62 4.5 3.8 3 23 162 183 161 183 0.97

2 11 0.0038 0.23 12.1 1.1 2 23 190 211 189 211 0.97

3 11 3.6e-05 0.0022 18.5 5.0 1 23 217 239 217 239 0.99

4 11 4.2e-05 0.0025 18.3 4.2 1 23 245 267 245 267 0.99

5 11 0.014 0.84 10.4 1.2 2 21 288 307 287 310 0.94

6 11 0.00015 0.0091 16.5 1.3 3 23 325 345 324 345 0.97

7 11 0.00047 0.029 15.0 0.2 1 23 348 370 348 370 0.98

8 11 1.1e-05 0.00069 20.1 2.3 1 23 377 400 377 400 0.98

9 11 5.7e-06 0.00034 21.0 0.3 1 23 406 429 406 429 0.97

10 11 0.013 0.79 10.5 1.4 1 23 435 457 435 457 0.96

11 11 0.024 1.5 9.6 2.4 1 23 463 485 463 486 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1	62	4.5	3.8	3	23	162	183	161	183	0.97
2	11	0.0038	0.23	12.1	1.1	2	23	190	211	189	211	0.97
3	11	3.6e-05	0.0022	18.5	5.0	1	23	217	239	217	239	0.99
4	11	4.2e-05	0.0025	18.3	4.2	1	23	245	267	245	267	0.99
5	11	0.014	0.84	10.4	1.2	2	21	288	307	287	310	0.94
6	11	0.00015	0.0091	16.5	1.3	3	23	325	345	324	345	0.97
7	11	0.00047	0.029	15.0	0.2	1	23	348	370	348	370	0.98
8	11	1.1e-05	0.00069	20.1	2.3	1	23	377	400	377	400	0.98
9	11	5.7e-06	0.00034	21.0	0.3	1	23	406	429	406	429	0.97
10	11	0.013	0.79	10.5	1.4	1	23	435	457	435	457	0.96
11	11	0.024	1.5	9.6	2.4	1	23	463	485	463	486	0.95

Sequence Information

Coding Sequence: ATGAAACATTCTATAAACGAAAAATTAAAATTACTTGCCCTGGCCGGTCAGAAAACTGATCAACTCTGCAGGTTTTGTTTGAAAGACAGCAACAGATATCTGGAACTCTACACGGTCGATGGAATTGCAACGAATATGACAAAATTATACGAGAGTATTACTAACACAAAACTTGATTATATGGATTGTTCAAACTGGATATGCTCCCAGTGTGAGCACGACATATCGAAACCAGAAACATTCATACAAAATCATTTACACGTACAAACTCTGTGGTCGGAATATTTACAATTGACTGAGGCTTCCAAACAAAATGCAGACATCTATTTGGAAGATATACAAAATACAGAATATCTCGATGAGTTTATTGATCCAGAATATAATGATGAAGTGAGGCAAGATATAACCACCTCGCTGTTAATAGACTTTATTCAAGATGATTCTGATCAAGATATTTACGAAATGACATCGATTAAAAATGACTGCAATTTTTGTCCAGATAACTTTAACACTTCATGTGAACAAAAAAAACATGAACGAACCAGACACAAAGATAAGCTAAGGGTCACTTGCGATATCTGCTCTAAGAGCTATGCCAATCTTAATATTCTTAATACGCATATGCATCGACATTTTCGTGCAAAGAGATTTAAATGCAGTTTCTGTGACAAAATGTTCCATCGAAAAAATGAGCTTCAGATACACGAACGAAAGCACACAAACGAACGTCCATACGTATGCCATCTCTGTGGTCATTCCTATAAAACTACAATGGTTCTGACACGTCATATACGAACACATTCAAATACCGATAATATACAGTATTACAAGGAGATACCTCCACCACCGAAACGAGTCCTTACGTGTGAGATATGTTTGCTGACATACGACACATTAAAACAACTAAAGGCACATTTACGCTGTGATCACGGTTCAACCGGTCTTGATGTCATAACTGAAATGCCGAAAAATTGTAGTATATGTCGTCAGGCGTTTTCTACTAACAAGGAACTTACGGAGCATCGTAAATTACACTATCAGTTTGAATGTGACATATGCAAAAATAGATTTGGCACTGAGGAAGTACTTAAAAATCACATTCTAACACATTCGTCGAAGGCGAGACCTTTCAAGTGTGACATATGTCAGTCCACATTTATACGAGCACCACATCTAAAGCAGCACATTCGTCGAAAACATACCACCGATCGTCCATTTGTATGTACGATTTGCAACAAAGGTTTTGCCGAGAAATATGAGCTGACCAATCACACAAAAATCGTGCATACCAAAGAGCGACCACACCCGTGTGATCTATGCCCCGATTCTTTCAGTACTACCACCACACTGAAACTGCACAAACAATTGCACACTGGTGTGTATCGCTATAACTGTGACATCTGTTCGATAAGTCTGTTTAATAGCTACACTCTATTTTCGCATAATCTAACACATCATTCGAAAGATAAAGAAAGCAATTCTGTGCCGGTAGTTGCTGAGATATGA
Protein Sequence: MKHSINEKLKLLALAGQKTDQLCRFCLKDSNRYLELYTVDGIATNMTKLYESITNTKLDYMDCSNWICSQCEHDISKPETFIQNHLHVQTLWSEYLQLTEASKQNADIYLEDIQNTEYLDEFIDPEYNDEVRQDITTSLLIDFIQDDSDQDIYEMTSIKNDCNFCPDNFNTSCEQKKHERTRHKDKLRVTCDICSKSYANLNILNTHMHRHFRAKRFKCSFCDKMFHRKNELQIHERKHTNERPYVCHLCGHSYKTTMVLTRHIRTHSNTDNIQYYKEIPPPPKRVLTCEICLLTYDTLKQLKAHLRCDHGSTGLDVITEMPKNCSICRQAFSTNKELTEHRKLHYQFECDICKNRFGTEEVLKNHILTHSSKARPFKCDICQSTFIRAPHLKQHIRRKHTTDRPFVCTICNKGFAEKYELTNHTKIVHTKERPHPCDLCPDSFSTTTTLKLHKQLHTGVYRYNCDICSISLFNSYTLFSHNLTHHSKDKESNSVPVVAEI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -