Bhyb006762.1
Basic Information
- Insect
- Bolitophila hybrida
- Gene Symbol
- -
- Assembly
- GCA_027564075.1
- Location
- JANSTU010040703.1:8457-10296[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00078 0.047 14.3 2.5 1 23 45 67 45 68 0.95 2 12 1.9 1.2e+02 3.6 2.9 1 23 214 237 214 237 0.93 3 12 0.15 8.9 7.1 0.6 1 23 242 265 242 265 0.91 4 12 8.3e-05 0.005 17.4 0.7 1 20 272 291 272 296 0.91 5 12 0.15 9.3 7.1 0.2 3 23 322 343 321 343 0.94 6 12 3.9e-05 0.0024 18.4 1.1 2 23 351 372 351 372 0.97 7 12 0.005 0.3 11.8 1.6 1 23 378 400 378 400 0.96 8 12 6.7e-07 4e-05 23.9 0.8 1 23 406 429 406 429 0.97 9 12 3.4e-05 0.0021 18.6 1.8 1 23 435 457 435 457 0.98 10 12 0.00042 0.026 15.1 5.0 1 23 463 485 463 485 0.98 11 12 3e-05 0.0018 18.7 2.0 1 23 491 513 491 513 0.96 12 12 1.8 1.1e+02 3.7 1.6 1 12 519 530 519 542 0.87
Sequence Information
- Coding Sequence
- ATGACATTGTTATTTGAAAACGTACCAAACACATCAAAAACAACAGTGTACCTAGAAGAGTTGACCACAGTAGCCGATCAAGTGTTTGCGAAGTCTGCCGAGATTGTTAGAAATGAATATGGACGCTACCTTTTTGTGTGCTTTCACTGTGGTACAACTTATACAACATCCACTGAAATACTTGTTCACATCGATAGCCATCATCATGTTATAAACCATACAAATGTTTACGAAAATTCAACACTTGTTGTTGGAGTTGATCAGCAAATATCTCAGCAGATTACTGTATTAGAAAATAATAATAATGTCGAACAAATCTTGCAAACCGAAATATATTCAGAAAATCCATTGGATTATACTGCTGAAATAATAACTCAGCACTTAGAGCACACTGATGCTGACAATAATCATTCTGAAGTAAATCTTACACTGCCGCACTGGGAATTAAATGCCGGACAAAGGAATATTCTGGAAGGAGTCTTTAATTTTCAAAGTAATATTCCTGATATACATTACACACCTCAATGGGAAGATATTTCTGTACAGAGCAAtctttcggAAGAACAGGACATTATTGAAAAAACTATTTTTGAAGAATTAATAAGTGCAACACAAAATTGTAATCCGACTACGACAGAATATAAATGCAACTTATGCTCTAATCAATTCCGTTGTGTTGTAACGCTCAAGGATCACATTCTCAACAAGCACCCACGTCATAAACATTTCTGTTCGATATGCAACATGGTATTTCTAAATCCTAGCCGTCTGGCCTATCATGAACAACAAGCCCATTTCCCCGATCGTAAGAAATTCAAATGTCTACTTTGTAAAAAAGGATTCACACGTCCGAATCTGTTGAATAAACATTATGTAATCAGTGGCCATGGTGAACAATTCGGTATTTCAACCGATCCGATTCCAGCAAAACCGCCGGGACCACATATCGCACAAAAGGTACTATGTCAGATCTGTGCACAGTTTGTTGGTACGAGAACCGAACTGAAACGACATTTAGCTAATGATCACTATGATCATCCGGGCacagcatcgtgtgacatatgcggaaatacatataatcaattgaacagtttacgaaatcatatgaaacgacattttcagagcaaacaacacaagtgcatctattgtgagaaattgtttttcgatcgtggaaatcttacgattcacgagcgcattcatacacaggaaaaaccgtacacatgtgatttgtgcggtaaaagttttagtgatccatctgagtataaaatgcacgagaaaagaagtcatacaggcgagaaaacacatcagtgtgatcagtgcggactgtcgtattttagtcgtgcattgttacgtcgtcacatactaaaacatactggtgttagaccatacaaatgcaatcattgtgatatgagttttatggaaaagattcaacttaaaaagcatacatttaaacatacgggcgagaaaccgtacaaatgtgatttatgtaatagatcgtttagtcgactgaataatatgagacagcataagattttgcacactggtgaaaaaccgtacaaatgtcgatactgcagtgtgagctttGCGCAGATTCCAGGCAGACGCTGTCACGAGAAGCGAGTTCATAGCATAGCATAG
- Protein Sequence
- MTLLFENVPNTSKTTVYLEELTTVADQVFAKSAEIVRNEYGRYLFVCFHCGTTYTTSTEILVHIDSHHHVINHTNVYENSTLVVGVDQQISQQITVLENNNNVEQILQTEIYSENPLDYTAEIITQHLEHTDADNNHSEVNLTLPHWELNAGQRNILEGVFNFQSNIPDIHYTPQWEDISVQSNLSEEQDIIEKTIFEELISATQNCNPTTTEYKCNLCSNQFRCVVTLKDHILNKHPRHKHFCSICNMVFLNPSRLAYHEQQAHFPDRKKFKCLLCKKGFTRPNLLNKHYVISGHGEQFGISTDPIPAKPPGPHIAQKVLCQICAQFVGTRTELKRHLANDHYDHPGTASCDICGNTYNQLNSLRNHMKRHFQSKQHKCIYCEKLFFDRGNLTIHERIHTQEKPYTCDLCGKSFSDPSEYKMHEKRSHTGEKTHQCDQCGLSYFSRALLRRHILKHTGVRPYKCNHCDMSFMEKIQLKKHTFKHTGEKPYKCDLCNRSFSRLNNMRQHKILHTGEKPYKCRYCSVSFAQIPGRRCHEKRVHSIA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -