Bhyb003688.1
Basic Information
- Insect
- Bolitophila hybrida
- Gene Symbol
- prdm10
- Assembly
- GCA_027564075.1
- Location
- JANSTU010051756.1:1-3551[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0025 0.15 12.7 0.7 2 23 101 122 100 122 0.94 2 11 0.0021 0.12 13.0 2.6 1 22 160 181 160 183 0.89 3 11 0.00058 0.035 14.7 3.3 1 23 209 231 209 231 0.98 4 11 0.005 0.3 11.8 0.2 2 23 241 262 240 262 0.97 5 11 0.083 5 7.9 0.3 1 23 269 291 269 291 0.97 6 11 0.0012 0.073 13.7 4.2 1 23 297 320 297 320 0.97 7 11 5.2e-06 0.00031 21.1 1.7 2 23 326 347 325 347 0.97 8 11 3.4e-06 0.0002 21.7 0.8 1 23 353 376 353 376 0.93 9 11 0.00011 0.0066 17.0 1.7 1 23 424 447 424 447 0.97 10 11 0.0036 0.22 12.2 4.7 1 23 469 492 469 492 0.97 11 11 0.00019 0.011 16.2 1.4 2 23 531 553 530 553 0.97
Sequence Information
- Coding Sequence
- ATGCCCCCTCCGAATGGACTTCCTTTATTGATGCTTAACGGAAATATGATCTTGGATATTTCTAATGAATACACATCTAATTGGATGCGTTTTGTTCGACTGGCGAGAAGCTCAACGGAGCAGAATCTGGAACTCTCCGAAATCGATGATAAGCTATACTTCAAGACATGTCAGAGAATTGCGGCAAAGCAAGAACTCAAAGTTGGCTACAGTAAAGAATACGCTGAAAAATATGGACTACCGTTGCTATTGCCAAGTGAGTCTGAACAAGACGCTCTGTTCACCAAAGCAAATCCTTGGCACTGTTACGAATGTGAACGTATGTTTGAGACATTTGACGATCTCCAAGTTCACCTTACCGAACATGATGATAAATTGGAACCGTTACCTGAAAAAAAGTCAGCGACTCACAAGCGTCGACGAAAAGGAACACGAACAAGGCTATCCTCTCGAAAAGTATCCGGACCAACAGTTCGATACGCATGTTGTTATTGCAGCAAAGTATTCTCAAAGTACATCAGTCTCAAGAGGCACAATGAATTGGCTCACTCGTTTGCAGACCTCGACGTAGATCGTGTGAACTCTGTGCTGACCAGCAGCAACAAAGAAAACACCAACAAATCTTTTAAGTGTGACCTATGCAGACGCTACTTTTCGTCTAGCGAACGGCTTGAGAAACATAAGAAAATGCATTGTACTGTAGCCGACCCAAATACAGTTCAATGCACATACTGCCCAAAGAAAATGATGACTCCTTCAGCGCTTTTTATGCATGTAAACTCGCACATCTACAAAAATCGCCTTTTCTACTGTTTGTATTGTTCTCTGCGGTTCCAGCTGGCTTCTGAGATCATGAATCACGTACAGGTACACATGCAAAACGGATTCTTCTACTGTGAACACTGCCAAAAGAAATTCAAAGAATACGTTGTGCTACGGAAACACGTCCGGTCAACACATTTGAGCGTTAGCCAATCATGTACTGAGTGTGGGAGAGATTTTAAGTCTCGCACTAAACTCAATCAACATATGCTCACACACTCGAATGTTCGCGAATTTCTGTGCTCAGATTGCGGCAAACAGTTTAAGCGCAAGGACAAATTACGTGACCACATAATAAATATTCACGAAAAGAAGGCCAATGCCGAAAAAGCCACATGTACAGCTTCATCCACAGAGGCGACACCATCGTCATCAAACGATTTAGTTTCTAAATCGAATACCAAAGTTCTCAAGAAAGTACCGTCTACAGACTATGAACATTTTATCTACAAATGTCATGACTGTCTGTTAGGATTTAAGCGACGCGGTATGCTTGTCAATCACATGGCTAAACGTCATCCGGACATCAGCATTGACTCTGTGCCCGAGTTAAATTTGCCAATTTTAAAGGCTGAACGTTTTTTCTATTGTCAATACTGTGAGAAAGTATACAAAAGCTGTAGCAAACGCAAGGCACATATTCTGAAAAACCATCCGGGTCAAGAGCTTCCAAAGTCCGCAAGATTGAAAAGCGATACACCAGATATACCAGGACAACCGAATCCATCATTTTCAGAGACATACGCCAACTCAGCTATACATGCACAACGCTGTCCATGGTGCCACAAACAGTACGCTTCAAAGGCTAGGCTTATTCAACATCAGCGCAAAGCTCACCAATTACCTACGACAGTGCAACATCTGCAAACAAACGATCAACATCTCGGCCATGAACAGGATTATCAACAAGATATCCATGGAACGACCGAGTGTGTGGTCATGGAAACGGTACAATTCGATCAACACGATCATCGTGCTTACAATGGTTATGAAACTGAGAATAAACTGTTAAAATTATCATCGGCTGCACTAGAAGCATCGATACGAGATGATTTTCATTTCTTTGATGAAAAACCACCGGTTATATCAATGGGTAACGTCGTTGAACTTGACGGATCTCTGTCCAAAGCTGATGTCAATTTTAAGGTTATTGGCAGTGATTTTGCGGATCCATCCTCTGTGGCAGTCGGCGATCTGAATCGATTGCCAGAATTGTTTGAAGAGATTGACTATATGAATATTAAATCGTTGCCCATGAGTAATGATTCAACTTTGCCGCGTGATTGTCCGACAAAAAAACATCCATCCTTTGCATATTCACTTAATCCGGG
- Protein Sequence
- MPPPNGLPLLMLNGNMILDISNEYTSNWMRFVRLARSSTEQNLELSEIDDKLYFKTCQRIAAKQELKVGYSKEYAEKYGLPLLLPSESEQDALFTKANPWHCYECERMFETFDDLQVHLTEHDDKLEPLPEKKSATHKRRRKGTRTRLSSRKVSGPTVRYACCYCSKVFSKYISLKRHNELAHSFADLDVDRVNSVLTSSNKENTNKSFKCDLCRRYFSSSERLEKHKKMHCTVADPNTVQCTYCPKKMMTPSALFMHVNSHIYKNRLFYCLYCSLRFQLASEIMNHVQVHMQNGFFYCEHCQKKFKEYVVLRKHVRSTHLSVSQSCTECGRDFKSRTKLNQHMLTHSNVREFLCSDCGKQFKRKDKLRDHIINIHEKKANAEKATCTASSTEATPSSSNDLVSKSNTKVLKKVPSTDYEHFIYKCHDCLLGFKRRGMLVNHMAKRHPDISIDSVPELNLPILKAERFFYCQYCEKVYKSCSKRKAHILKNHPGQELPKSARLKSDTPDIPGQPNPSFSETYANSAIHAQRCPWCHKQYASKARLIQHQRKAHQLPTTVQHLQTNDQHLGHEQDYQQDIHGTTECVVMETVQFDQHDHRAYNGYETENKLLKLSSAALEASIRDDFHFFDEKPPVISMGNVVELDGSLSKADVNFKVIGSDFADPSSVAVGDLNRLPELFEEIDYMNIKSLPMSNDSTLPRDCPTKKHPSFAYSLNP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -