Basic Information

Insect: Bolitophila hybrida
Gene Symbol: -
Assembly: GCA_027564075.1
Location: JANSTU010004532.1:9018-11196[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 3.7e-06 0.00022 21.6 2.3 1 23 324 346 324 346 0.98

2 7 3.2e-09 1.9e-07 31.3 0.3 1 23 352 374 352 374 0.99

3 7 2.9e-06 0.00018 21.9 0.6 1 23 380 402 380 402 0.98

4 7 3.1e-07 1.9e-05 25.0 1.2 2 23 412 433 411 433 0.98

5 7 1.1e-05 0.00066 20.1 2.8 1 23 439 461 439 461 0.99

6 7 0.00074 0.045 14.4 0.4 1 23 467 489 467 489 0.95

7 7 0.00051 0.031 14.9 0.4 1 23 495 517 495 517 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	3.7e-06	0.00022	21.6	2.3	1	23	324	346	324	346	0.98
2	7	3.2e-09	1.9e-07	31.3	0.3	1	23	352	374	352	374	0.99
3	7	2.9e-06	0.00018	21.9	0.6	1	23	380	402	380	402	0.98
4	7	3.1e-07	1.9e-05	25.0	1.2	2	23	412	433	411	433	0.98
5	7	1.1e-05	0.00066	20.1	2.8	1	23	439	461	439	461	0.99
6	7	0.00074	0.045	14.4	0.4	1	23	467	489	467	489	0.95
7	7	0.00051	0.031	14.9	0.4	1	23	495	517	495	517	0.97

Sequence Information

Coding Sequence: ATGGAGGATGAACAGAAACAGGTCCATCTGGACCGCATTTGCAGGTGCTGTCTCATCGAACGCAGCAATATGAAAACAATTTTCGATGCTTGTCTACCTGAAATGCTTATGGCCAGTGCAAATATACTCATTGATCATCTGGACGGTCTGCCACAGTTGATATGCTTCCAGTGTGTCCAACAAGTCAATCGATCATATACATTCCGTCAGCAGTGCGAACGCTCAGACAGTATGCTACGACATTGGTGTCAGCCTCTGATGGAAATATTACCTGCTGAAGAAGCAATCGATGAGATTTTGCTTGAGAAATCGCTACAAGATATTCAAACCAATGTACCATCGCATGATTCTGCAGGTGCACATGAACCAGATGCCTTGGATGAAGCGAATTCTAACAAATGGATGGACGTTATAAATGTTCTGTTCAATCAACCCGAAAATGGACAACACAACGACGGTAAAACGATTATACTGAAGTTTTCTGATAATCAACATGGATTAGATCAAATCGAATGCGTGGAGACTAATCAAATCGAATGCGTGGAAAACAATCTACATCACTCTGATATGCAGGCGTCACATCAACTATCACTTGCGGTTGCAAAGAGTCCAGTAGATAAGGATCAACTTTTAAGCCAAATGGCTAGTCCCGATCCCATGCCGAACGTCGATGATTTATCAATGGGCAATGATAAGATTGACCACTCCGTTCACGCGGAAGACGATGAACTAATAAATGATGAATTCCTTACAGAGCGTATGTCTGATATTCCGGATGACTATATTGCCTTGATAAACAGTTTCTCTCCGACGCCAACCGATTTTCTTAAACATACAGATAAAAGCGAGGAAGAGATCTTGATCGAAGCCGCCGCTGAGCATGCGGCTAACTTTGAAGTTCTATGTAATTCGCCTTCCGTAtctaatcagctagagatgcacaagctcacgcataagggaattaaggagcatgtttgtacggtctgcaataaaGAGTTTACCCTaaagtggcagctgaaagtacaccagcgcacgcatactggcgaaaggccgtatcagtgcacctattgcgataagagtttcggtcagccaggaaatctaaacgctcatatccgtacgcatactggtgagaaaccttacgcttgtactgtgtgcagcaagtcatttgttactgcgtaccagcgtactgcccatatgcgaatgcatacaaagatcagacctccgccgaagacaaagtgtgaagaatgtggcaaaatgtgcgccaacaacggtgatcttaaggttcacatgcgtacgcataccggagagcgtccgtacgagtgcagtgtttgccaaaaacgcttcgttatgtattcgcacatgacggtacatatgcgaagtcattccggtgagaaaccttacaaatgtgaggtgtgcgaacgtgcttttgcaagtggtacaatgctcaagaaacactcgtacattcatactggtgaaaagcggtatgcctgtacaatttgcgacaaacgatttaTGCAGCCGAGTGGACGTGTAACGCATGAGAAATCTCACTTTAAAGAAAATCGAAAGCGATCTTCTAAAAATGGTACTGTAGAGACAGTCGATAGTCTATCAAATGTTGTTGTTGATAATGCTGATGCTGCTGCAACGGAGAAAAACGTTAGCCTCACGGAATCTACTGAAGCAGAAGTATAA
Protein Sequence: MEDEQKQVHLDRICRCCLIERSNMKTIFDACLPEMLMASANILIDHLDGLPQLICFQCVQQVNRSYTFRQQCERSDSMLRHWCQPLMEILPAEEAIDEILLEKSLQDIQTNVPSHDSAGAHEPDALDEANSNKWMDVINVLFNQPENGQHNDGKTIILKFSDNQHGLDQIECVETNQIECVENNLHHSDMQASHQLSLAVAKSPVDKDQLLSQMASPDPMPNVDDLSMGNDKIDHSVHAEDDELINDEFLTERMSDIPDDYIALINSFSPTPTDFLKHTDKSEEEILIEAAAEHAANFEVLCNSPSVSNQLEMHKLTHKGIKEHVCTVCNKEFTLKWQLKVHQRTHTGERPYQCTYCDKSFGQPGNLNAHIRTHTGEKPYACTVCSKSFVTAYQRTAHMRMHTKIRPPPKTKCEECGKMCANNGDLKVHMRTHTGERPYECSVCQKRFVMYSHMTVHMRSHSGEKPYKCEVCERAFASGTMLKKHSYIHTGEKRYACTICDKRFMQPSGRVTHEKSHFKENRKRSSKNGTVETVDSLSNVVVDNADAAATEKNVSLTESTEAEV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -