Basic Information

Insect: Bolitophila hybrida
Gene Symbol: ZIPIC
Assembly: GCA_027564075.1
Location: JANSTU010015020.1:2017-4026[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 7.9e-05 0.0048 17.4 1.1 1 23 283 305 283 305 0.98

2 10 0.00032 0.02 15.5 3.2 1 23 310 332 310 332 0.98

3 10 1.9e-06 0.00011 22.5 0.6 1 23 338 361 338 361 0.96

4 10 0.00028 0.017 15.7 1.0 1 23 367 389 367 389 0.96

5 10 5.3e-05 0.0032 18.0 1.0 1 23 395 417 395 417 0.98

6 10 1.4 87 4.0 3.5 2 23 441 462 440 462 0.94

7 10 2.3e-05 0.0014 19.1 0.9 1 23 468 490 468 490 0.97

8 10 1.8e-05 0.0011 19.5 0.8 1 23 496 518 496 518 0.98

9 10 0.00011 0.0068 17.0 1.5 1 23 524 546 524 546 0.97

10 10 2.6e-06 0.00016 22.1 1.6 1 23 552 574 552 574 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	7.9e-05	0.0048	17.4	1.1	1	23	283	305	283	305	0.98
2	10	0.00032	0.02	15.5	3.2	1	23	310	332	310	332	0.98
3	10	1.9e-06	0.00011	22.5	0.6	1	23	338	361	338	361	0.96
4	10	0.00028	0.017	15.7	1.0	1	23	367	389	367	389	0.96
5	10	5.3e-05	0.0032	18.0	1.0	1	23	395	417	395	417	0.98
6	10	1.4	87	4.0	3.5	2	23	441	462	440	462	0.94
7	10	2.3e-05	0.0014	19.1	0.9	1	23	468	490	468	490	0.97
8	10	1.8e-05	0.0011	19.5	0.8	1	23	496	518	496	518	0.98
9	10	0.00011	0.0068	17.0	1.5	1	23	524	546	524	546	0.97
10	10	2.6e-06	0.00016	22.1	1.6	1	23	552	574	552	574	0.98

Sequence Information

Coding Sequence: ATGGACAATATCTATTATTCCTTCGCAAAAATATGCAGAGTATGCGAGAATAACAAAGAATTAATCAACCTGGTCCTCGATCGACATAAAAACATTGTGAAAAAACTCCGAGCCTGCGCGGACATCGCGTTTGATGCCAATGATGAACTGCCCAAATATCTGTGCAAACGATGCTCCGAGTGTTTGGAATCATCGTACAAGTTCAAGATTCAGTGTGAGTATACAGATCAGAAGATTCGCGATGCATTGCATATGATAGATGTAAAACAGAGCGTCAAGCAAGAATCGGAACTGGAGCTATTAGATGGCGATACAAATTCTCAAAATAAATTACCAGAGGAAGCTTTACAACAGATAATTGAAGTACTACATGAAAGCATTAATGTGGATGGAAACGAAGAGCAAGGACATGAACCAGAACAAGATCCAGAAGAAAATGTTAGTAGTGAAGAAACACCAATCATTGTGGAATTTAATGGTGTTTGTTTCGATGATTACTCAAATGTTGAACACCTCATTGATATCGACGAAGAAGAGATGGCAAACGATACTGCTCAGTTCACAGAGGACGCTGTGACTGTGCAAGCCGAGGAACAATTGGAAGATGAACATCTGAAAACGACTCAAGTATGCGAAGTGCAGTTTATAGATAATTCCGAGCAGAGTGTAACATCTGAAAATCCAGAAGAACTACAGGATTTTCAAAGTGAATTCGATGGCGCTGAACTGATATACGAGGAAGAATTTACTCCAAGAGAGCAGTGCGATCAGGAGGAAGGCGATATTGTGACGGAATTTTCAGAGTATACAGAATCCCTAACAAGTCCCAAAGAATTTAAGAAACGCTTCGTGTGTGACACATGTGGAGAGAACTTTGTAAATTTTGTCGAATTCAATAAACACAAAAAAACACACGGCAAACAACGGTATCAGTGTCCGACATGTGATCGCTGGTTCTCCAAGCGCTATCACATGAAGAATCACCAACTTGTGCACCAGACCGATATACGTTTCGATTGCGAAAAATGTCCGAAGACGTACACAAACCAAGGTAACTTGGACAGGCACGTTCGTGTATTTCATAATGGTGAAAAAGCACACGTTTGCGACAAATGCGGCAAAGGATTCTCGCAATCTACTATTTTGAAAACGCACTATGCTGTACATATGGTGGAACGTAATTTTGAATGTGACATTTGTGCGAAAAGGTACAAAACACAGGATTACTTGAACCTACATCGAGAACGTCACCTGCCGATTGAGCAACGTACCAAAAAAAACTATTCCAGCAAGAAATACACTCCGACAAAAAAGATTTGCATTTGTGCATATTGTGGAAAGAAATCAAATAGCATAGCACTGCACCAGagtcacacacgtacacacaccggcgagaaaccctacgaatgtccagtgtgtcagagaaaattttcattccagcagagtcttaaatcacacgttcttttgcataccggggagaaaccgtataaatgtgaaatatgtggattgactttccgacaaattggtcaccttaagggacataaactagtgcatagtggtcagaaattacacaagtgtctcatttgtttcaagtcctttgctctcaaaggtaacctaactgtacacgagcgactgcattctggtgaaacaccttaccattgtgatgtatgcccaaagatgtttaccgactcaaatggattgaagcgtcaccggcaagtccatgtaCGGCATGAAATCCGTATCGCTGAACGTCCGCCAAAAATTGAATTTGATTTAGATGTCGATGATCAATTTAGTCACACGTCTGAAATAACCGATATGGGCGAAGGTGTCGAAGATCTCGAGAAAAACACAAAAACATCATCTGAACATATTATAATCGATGCGTCCGGGCGACAATATGCCATCGTCTCGACCGTTTAA
Protein Sequence: MDNIYYSFAKICRVCENNKELINLVLDRHKNIVKKLRACADIAFDANDELPKYLCKRCSECLESSYKFKIQCEYTDQKIRDALHMIDVKQSVKQESELELLDGDTNSQNKLPEEALQQIIEVLHESINVDGNEEQGHEPEQDPEENVSSEETPIIVEFNGVCFDDYSNVEHLIDIDEEEMANDTAQFTEDAVTVQAEEQLEDEHLKTTQVCEVQFIDNSEQSVTSENPEELQDFQSEFDGAELIYEEEFTPREQCDQEEGDIVTEFSEYTESLTSPKEFKKRFVCDTCGENFVNFVEFNKHKKTHGKQRYQCPTCDRWFSKRYHMKNHQLVHQTDIRFDCEKCPKTYTNQGNLDRHVRVFHNGEKAHVCDKCGKGFSQSTILKTHYAVHMVERNFECDICAKRYKTQDYLNLHRERHLPIEQRTKKNYSSKKYTPTKKICICAYCGKKSNSIALHQSHTRTHTGEKPYECPVCQRKFSFQQSLKSHVLLHTGEKPYKCEICGLTFRQIGHLKGHKLVHSGQKLHKCLICFKSFALKGNLTVHERLHSGETPYHCDVCPKMFTDSNGLKRHRQVHVRHEIRIAERPPKIEFDLDVDDQFSHTSEITDMGEGVEDLEKNTKTSSEHIIIDASGRQYAIVSTV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -