Bhyb013373.1
Basic Information
- Insect
- Bolitophila hybrida
- Gene Symbol
- -
- Assembly
- GCA_027564075.1
- Location
- JANSTU010047720.1:21930-26259[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.9 1.2e+02 3.6 0.2 2 23 6 27 5 27 0.93 2 14 0.014 0.87 10.3 0.1 1 23 920 943 920 943 0.92 3 14 0.18 11 6.9 1.2 1 23 1031 1053 1031 1053 0.95 4 14 1e-05 0.00063 20.2 2.2 2 23 1056 1077 1056 1077 0.97 5 14 0.0045 0.27 11.9 2.7 1 23 1083 1105 1083 1105 0.96 6 14 1.1e-05 0.00068 20.1 4.8 2 23 1112 1133 1111 1134 0.95 7 14 9.1 5.5e+02 1.5 0.0 6 23 1148 1165 1147 1165 0.97 8 14 0.0049 0.3 11.8 5.6 3 23 1172 1193 1170 1193 0.95 9 14 0.0015 0.093 13.4 1.3 2 23 1208 1228 1207 1228 0.97 10 14 4.4e-06 0.00026 21.4 1.2 1 20 1234 1253 1234 1256 0.94 11 14 4.6e-05 0.0028 18.2 0.7 1 23 1264 1286 1264 1286 0.99 12 14 0.00017 0.01 16.4 5.3 1 23 1292 1314 1292 1314 0.98 13 14 1.1e-06 6.6e-05 23.3 3.5 1 23 1320 1342 1320 1342 0.99 14 14 0.2 12 6.7 4.3 1 23 1348 1370 1348 1371 0.93
Sequence Information
- Coding Sequence
- ATGCAGTCCCAAATACAGTGCCCCGTATGTACGCTGTACCTGCATGTGGGCATGAACCTGACTGCTCATCTGGAAACACATCCGAAAGAGCAGGTGATCAGCGCACTTGTCAACGTTACTTTGTTACAACAAAAGAACAATGACGAAACCGATGTCAGTGCGAGTACGTTTCAGTGTAGTCGTTATGCCCCATTACCGGTGGATTCTACTCACAGTATCGATTACTATGCATCTCCTCACGTGATTTCTACCCCACAACGACAGCCCGTAATGATTGTGAACAGCCGCACTCACGTATACCAAGAAGGACTATCATCGGCCCAGACCATAATTACCAGGCATGCATTACCATTATCTAATGCTCAACCAGTGGTTCGAAGACCTGCTATTATGCCAGCCATGCATACTCCAGTTGAAACACCTTCTGTAGTGACCTCATCAAACCATCATTTTTCTTACTACCGTCAGAGTGATAACGTTGAATCACAACCGTTAATAACATACATTCAAGAACAGGATATGTCTGTTGACGATTCAGAGTTTATTGAAAACCATGAATTATTTGGAGATCACAACCAGGAAGAATACTGCCAAATAGACGAGATTGCCAAAGACGATTGTGAAATTATCGAGGCATCTTCTCGGTTATCAACTCACAACGATGAAGAATATTGCCATACAGAGGAAGTTGTCACAATTGATTGTGAAATTGTCGAAGCAACTTCTCGGCCGGCGTCCGTCATTCAGTTTAAAGAAGTTAATGTGGAAGAATCCATAGACGCAGAGATTCAAAGCATTCAACAGCGTAAATCATCTTTGGGAGGATTACAAGTAATCAGTAATGTGAAGCTAGAGCCGAACACAATTCTGGATGTGTCGAGTTTGGGTCAAAAGCTTCGCAATGCAATACAACTCAATGACATAATTCGAAGTCGACGAATTTCGATTAGTGAGACCGTGGACTTGGTAACAGAAGAGGAAGAGTCAGCAGTTTTATATCCAACTCAAGCGGTTGAGGATACCAGCATTGAAACAGGGCAAACATTATTTTGTATGGAATCTTCCGAAGACGATCATAAAGAGGAATCATTGCCCACATACTATGAAGAAGGACAATGCGGTGAAGAAGAAAATGAGCCTCCCACTACAGAAACGATCTCTTCCAAATCAATGGACACAGCTGAAAAGTCTGAAGAACAATGTAGAAATATCTCGGAACAAGTCCGAAGCATCATCATAATGAAACCGAAAGTGCAAATTCCTATCGAAAAGCAGTCAACGGTACGACAAACTGAACCTGCTCGATTGTTATCCCCAGTAGCTTGTTCTAGTGCGGCAACAAGTGTCATTCGAATGGCATCACCGCAAAAGACTAAAACTCCTATAACCGAAATACCTCGTCGACCGCTTGTAAAAACTCCTTACGTTAAAACGCCCAAAAAGATCTTAGTGAAATTTAACAAACCATTTGTGTTCCCTGTCGATGAGGAAGCGAATCAGCAGCTCTCTGAAATAGAGCCCATTCATCGGTCAGAACAGCCAGCTTGCAGTAGTAAAAGTAGTTTTTCATCAAATATTGTGCCAATTCCGAAAACATTGAAACAAGAAGTGTTGGAGACTGATTGTATGGCCGTGATTGAGCCAAAGCCAGAAATTGAAGAAAAAATGTATGAAGACGTACAAGAAAACAAACAACTAGATGACTATCCACATAGTCCTTTGCGTTCGTTTACGCCAAACACTCCAAACGAATCGCGGAGAGGTGGCAAATTTGAAATTGTTGGCTTAAACTTTGAGCATAATTCTGAAGTGATAATATCGGATGAATTTGAAGTTACTGAAGTCATCAGCGGAGATGTATCCGTGATTGAATCGACGAAATCCTCATTCGAAGAAACTCCGCTGGATATTAATGACTGCGATAATGAAGAGAAAAATATAGATGTGGAAAAATCGAATAGCGATTGTACTGCAGAATCGGATGAGAAGACAGATGTCAAAATCGAATCGTGGGCATTGAGTATAATTTCAAATAATACCGATAGAACAGGTAAAGAAGTTGTCAAGAAAAAAAAAATATTCAGTCATCCAGTGGCCTCCTCAAGTAGAGATATATTCTCTGGTGCATCGACGTCATCGCACTCTCAACCCACAACCTCGTTTCGGCGTGATTTTGCCACGGCTGGACCGAGTCGAATTGACTATGGCCTATCGTCGTTTTTGGGTTTCAGTGAACCGACGGAAGCCGATGACTTCTATTCACCAGCCCGCCTGTCGCCTATTCCTTATGCCCAAGAGCCCTATGGATGGACGCAACGATTTAGTCCGCAATATGTTCCTTTCGAGAGTGGCGAGCGCACCTCTTACACGGACCTTGATATGTGCAAGAACACAAATTCTCTAAATGGTGAACGAGCACCGTCGACCGATAGTCTCAACATTCGTACAGACGAACAGATGCCCGCCAAAGGAGAGATATCCGAACAGGAAAGTAATGGCGACTTAGACGGTTCTTGGAGTCATCAGAATTACCCCGTGCAGGATACACTGCCGCGTTATCCAAGCTCTTATGACACTACTGTGGCCCGCGAGAGTTGGAGTCTAAGTACCGATCAGAATGTGTCCCAACTAGACAGGCGTGTTACAGTTTTGCCGAAATTCACTCCACTTGACTCTCCATCATATCAGGATCCCGACATAAAGCCATCCATTGATGATTTGACATCCAACATCGGAAAAATAAAAAAAGCTCGAACGTATATGTGTCCAGAGTGTCCGGAAGTTTTTTCTGTACTTAGACTGAAACGTCAACATCTGGTTAGTCAACACGACTACTCGGCGCGACCATATCGCGCAAAGATTCCGTGTACCACCACCACGGCACGTAAGTCAGCAACATCCACTACTGTCACCACCGAAATGACTGATCTGGACATAAAACAGGAAACAACTGTAACAACTCGTCAAAGTCCCGCAAGTATGAACCGGTACTTGTTAAACTACAACTGGAACGTATTAAGAGTTAAACTTACAACGGGAGTAAAAGTGATGCCCAACGATTTACCCATGTTACCCAACGATTCTAACGCCTACCTTTGTATGGTCTGTCACGAGCAATTCTACAGTATAAAGACGTTCGATGCCCACATGTCAGTACATCCAGCCGAATGTAACACCTGCGGACGCACCTTTAAACACTGGATAAATCTTAGCGTACACCTAAAGCGTCACCTGAATATTCGAAATTACTCATGCATCCACTGCAGCAAAAAGTTTGTGCTCCGTCAAAATCTACTAGAGCACATGAACACACACAGCGGAAATTCACCATTACAATGCAAGATTTGCTCAAAGCGCTTTCGACGATACTCGAATTTAATTCAACATCGAAATCGGCATCATCTTAAGATCCGACCTAAAGAGAAAGATTATATTTGTGCATGTGGTGAAGTATTCCACTCTGAAGCGAAGATTGCCTGGCACAAGGAGACACACGACAAGAAACCAAAGTGTTGTCCATACTGTCGCGAACGTTTCATGCACAAGAACAGTTTGTCCAGGCACATTCGTCTATCACACACGGAACTATTTGCTATACACAAAAGCAATTCTGAAACCGTTAAGTGTGAGATCTGCAAAAAGCATTACATGAAATCTAGCCTCAAGGCACATATGGCTGTGCATTCGGTCCAAACACAATACGAATGTACCATTTGTAATAAGACATTCACGACAAAGTGGAATTTGAAACAGCATAAATGGATTCACGCCAGTCGTTCTTCGAAGCCATTTAAGTGTACGCTATGTACAAAAGCATTTATTCGGGAGGTTGAGTACGTGTCCCATATGAATACGCACAAGTCAATTAGACCATATACGTGCGACCACTGTGGATGCCAATTTGCTCGCAAGTACAATTGGCTCCGtcacacccgcgagcatgaaacgcccaaaaagtataaatgcgaagactgtggtaagtcattccatcgggcctattatttaacggagcaccgtcgctcacatactggcgaacgaccgttcgagtgtatcatctgcggcaagacgtccacgaccaaaaccaaccacaacaagcacGTAAAGATCCACCATGCTCGTGACCCCCTTACCGCTGAGGGCTAG
- Protein Sequence
- MQSQIQCPVCTLYLHVGMNLTAHLETHPKEQVISALVNVTLLQQKNNDETDVSASTFQCSRYAPLPVDSTHSIDYYASPHVISTPQRQPVMIVNSRTHVYQEGLSSAQTIITRHALPLSNAQPVVRRPAIMPAMHTPVETPSVVTSSNHHFSYYRQSDNVESQPLITYIQEQDMSVDDSEFIENHELFGDHNQEEYCQIDEIAKDDCEIIEASSRLSTHNDEEYCHTEEVVTIDCEIVEATSRPASVIQFKEVNVEESIDAEIQSIQQRKSSLGGLQVISNVKLEPNTILDVSSLGQKLRNAIQLNDIIRSRRISISETVDLVTEEEESAVLYPTQAVEDTSIETGQTLFCMESSEDDHKEESLPTYYEEGQCGEEENEPPTTETISSKSMDTAEKSEEQCRNISEQVRSIIIMKPKVQIPIEKQSTVRQTEPARLLSPVACSSAATSVIRMASPQKTKTPITEIPRRPLVKTPYVKTPKKILVKFNKPFVFPVDEEANQQLSEIEPIHRSEQPACSSKSSFSSNIVPIPKTLKQEVLETDCMAVIEPKPEIEEKMYEDVQENKQLDDYPHSPLRSFTPNTPNESRRGGKFEIVGLNFEHNSEVIISDEFEVTEVISGDVSVIESTKSSFEETPLDINDCDNEEKNIDVEKSNSDCTAESDEKTDVKIESWALSIISNNTDRTGKEVVKKKKIFSHPVASSSRDIFSGASTSSHSQPTTSFRRDFATAGPSRIDYGLSSFLGFSEPTEADDFYSPARLSPIPYAQEPYGWTQRFSPQYVPFESGERTSYTDLDMCKNTNSLNGERAPSTDSLNIRTDEQMPAKGEISEQESNGDLDGSWSHQNYPVQDTLPRYPSSYDTTVARESWSLSTDQNVSQLDRRVTVLPKFTPLDSPSYQDPDIKPSIDDLTSNIGKIKKARTYMCPECPEVFSVLRLKRQHLVSQHDYSARPYRAKIPCTTTTARKSATSTTVTTEMTDLDIKQETTVTTRQSPASMNRYLLNYNWNVLRVKLTTGVKVMPNDLPMLPNDSNAYLCMVCHEQFYSIKTFDAHMSVHPAECNTCGRTFKHWINLSVHLKRHLNIRNYSCIHCSKKFVLRQNLLEHMNTHSGNSPLQCKICSKRFRRYSNLIQHRNRHHLKIRPKEKDYICACGEVFHSEAKIAWHKETHDKKPKCCPYCRERFMHKNSLSRHIRLSHTELFAIHKSNSETVKCEICKKHYMKSSLKAHMAVHSVQTQYECTICNKTFTTKWNLKQHKWIHASRSSKPFKCTLCTKAFIREVEYVSHMNTHKSIRPYTCDHCGCQFARKYNWLRHTREHETPKKYKCEDCGKSFHRAYYLTEHRRSHTGERPFECIICGKTSTTKTNHNKHVKIHHARDPLTAEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -