Basic Information

Insect: Bolitophila hybrida
Gene Symbol: -
Assembly: GCA_027564075.1
Location: JANSTU010049290.1:2037-4420[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0014 0.087 13.5 2.8 1 23 221 244 221 244 0.97

2 13 0.022 1.3 9.8 1.4 1 23 250 272 250 272 0.98

3 13 0.00023 0.014 15.9 5.4 1 23 278 300 278 300 0.97

4 13 8.4e-06 0.00051 20.5 0.4 1 23 306 328 306 328 0.96

5 13 0.00052 0.032 14.8 1.2 1 23 334 356 334 356 0.98

6 13 0.0017 0.1 13.2 1.5 1 23 359 381 359 381 0.99

7 13 8.9 5.4e+02 1.5 0.9 3 23 454 472 452 472 0.67

8 13 8.2e-05 0.005 17.4 2.1 2 23 480 502 479 502 0.97

9 13 0.0018 0.11 13.1 0.4 1 23 508 530 508 530 0.99

10 13 0.00011 0.0064 17.0 3.1 3 23 538 558 537 558 0.97

11 13 9.4e-07 5.7e-05 23.5 0.0 1 23 564 586 564 586 0.97

12 13 0.00029 0.018 15.6 2.0 1 23 592 614 592 614 0.99

13 13 0.034 2.1 9.1 1.0 1 23 620 642 620 642 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0014	0.087	13.5	2.8	1	23	221	244	221	244	0.97
2	13	0.022	1.3	9.8	1.4	1	23	250	272	250	272	0.98
3	13	0.00023	0.014	15.9	5.4	1	23	278	300	278	300	0.97
4	13	8.4e-06	0.00051	20.5	0.4	1	23	306	328	306	328	0.96
5	13	0.00052	0.032	14.8	1.2	1	23	334	356	334	356	0.98
6	13	0.0017	0.1	13.2	1.5	1	23	359	381	359	381	0.99
7	13	8.9	5.4e+02	1.5	0.9	3	23	454	472	452	472	0.67
8	13	8.2e-05	0.005	17.4	2.1	2	23	480	502	479	502	0.97
9	13	0.0018	0.11	13.1	0.4	1	23	508	530	508	530	0.99
10	13	0.00011	0.0064	17.0	3.1	3	23	538	558	537	558	0.97
11	13	9.4e-07	5.7e-05	23.5	0.0	1	23	564	586	564	586	0.97
12	13	0.00029	0.018	15.6	2.0	1	23	592	614	592	614	0.99
13	13	0.034	2.1	9.1	1.0	1	23	620	642	620	642	0.97

Sequence Information

Coding Sequence: ATGCACAGTACACGCAAAGAGGATCCGAAATTTGAAGATTTCACAAAAATATGCCGATTTTGTTTGATTGTATCATCAACCATGTCGCCGATTTATAAGTCAGCCACAAACGAAGATCACATCGAAGACACAGACAGTCTGGTGAATGTGATAGCTGACACTGTTTCTATTACGGTACATCCCGATGATCAGTTACCAATGCTTTTGTGCGACAAGTGCTTGGAACAATTACTTGCATGCAATGCATTTCGAAAACAGTGCTCATTGGCAAATGAATGCTTGGAGAGGGTCAAGGAAAATGTAACATTGTCTAAGCTAAGAGAGCGTAGCAGTAGTCAGTTGTACCAGTTGGCGGTCGAAGTGCTCCAAGCAGAGCAAAGCGATATTGAGACCGCAAATAGTTTCATTGGATCGAATAAACAGCACATTGCATCGGATCAAGTAATCAGTGGATCAGACATAAAAATCAGTGCAGCCTCTGCGGGATCTGAAAAGAAGCCGCTCAAAAATCGAATGTCTAAGAAATTAACAAAGAAATCAAAAACTGATAAGACAAAACAAAAAGGGGGAAAAGAGCGTGTGGTCTGTCCGATATGTGGTGTTTTAGTGTTTTCACTAGATAGCCATACGCTACTGATGCACACGGAACGTGTGTACGATCACGAGTGTGAAATGTGCTCGAAAATGTTCTTTAGCAAAGCGCGTCTTAAGGAGCACTTTCGTATGGTGCACACTGATAAAAGAAAACACAAATGTAGTCTTTGCTTGAGTGCTTTTAAATCAAATGGTATCCTACAACGGCACATGGTCACGCACACTGGTGAGCAGAACTTTCACTGTGACCTCTGCAGTCGATCGTTTGGACGCTCTTCCTCCTTACATAAACATCAGTTATCACATGCACAAAATCGTCAATTCTCCTGTGAGTTCTGTGACAAAACGTTTGTACGTCGTGATGGTCTACGTAATCACGTGGTCATCCATACCGGTAACAAGCCGTACTCATGTGGTCTTTGCCCAATGACGTTCAAGTTCTCGTCATCAGTGTCGTTGCACCGGAAGACACATTTACCGTACCGCTGTGATGAGTGTACCCTAGACTTTAAGTCAATTCTTTTATTCCGGACGCACATGAAGAGTCACCAATCTAACCAAATATCTGAACTTAAAGTTCCTAAGATTGAGCCGATTGTGTGGATTGGAGATTCAGATTTTCCGGCAGAATCCGGTGATTTTTCAGAGTGTGCCGACGAAGAGGAAAAGGAACAACCTATACGACCTGTTAAGAAAAAAACACTGAAGACAATAAAACCTCCAAAACTTGACCGGAAGTCAAAGTCAAAGCCTCAAAAAGAAATCTGTCCGACTTGCGGTGTAATTGTGATTAACTTGAATACACACATTCAAATGATGCACGAAGAACGTGTCTACGATATGGAATGTGACATTTGCAAAAAGAAATTCCATCAAAAAGGACGCCTAAAGGAACACATTCGTATGGTGCACATGGACGAGCGAACCTATAAATGCACTTTGTGCCCAAATGCCTATAAATCAAAAGCTATTCTGACCAAGCACTTGATCACACATACTGGGGAGAAGAACAATCACTGTGATCTATGCAATCAGTCATTCGGTCGGGCATCAACACTCAAAAAGCACCGTTTGACACATACACAGGAACGTCATTTcccgtgtgaagtctgcggcaagtcatttgcacgtcgcgaaggcctacgaaatcacattgtcattcataccggtgataaaccttacaagtgtggcatttgtacggaaacgtttaagtTTTCGTCAACAGCTTCCCAGCATCGGCGCTCGCACTTACAGAATCAACCGTACAAGTGTTTACCATGCAAAATGGATTTTAAGTCAATTGTTCTATTTCGCACGCACATGAAGATACATAAGACGACATCGGATGCGTAG
Protein Sequence: MHSTRKEDPKFEDFTKICRFCLIVSSTMSPIYKSATNEDHIEDTDSLVNVIADTVSITVHPDDQLPMLLCDKCLEQLLACNAFRKQCSLANECLERVKENVTLSKLRERSSSQLYQLAVEVLQAEQSDIETANSFIGSNKQHIASDQVISGSDIKISAASAGSEKKPLKNRMSKKLTKKSKTDKTKQKGGKERVVCPICGVLVFSLDSHTLLMHTERVYDHECEMCSKMFFSKARLKEHFRMVHTDKRKHKCSLCLSAFKSNGILQRHMVTHTGEQNFHCDLCSRSFGRSSSLHKHQLSHAQNRQFSCEFCDKTFVRRDGLRNHVVIHTGNKPYSCGLCPMTFKFSSSVSLHRKTHLPYRCDECTLDFKSILLFRTHMKSHQSNQISELKVPKIEPIVWIGDSDFPAESGDFSECADEEEKEQPIRPVKKKTLKTIKPPKLDRKSKSKPQKEICPTCGVIVINLNTHIQMMHEERVYDMECDICKKKFHQKGRLKEHIRMVHMDERTYKCTLCPNAYKSKAILTKHLITHTGEKNNHCDLCNQSFGRASTLKKHRLTHTQERHFPCEVCGKSFARREGLRNHIVIHTGDKPYKCGICTETFKFSSTASQHRRSHLQNQPYKCLPCKMDFKSIVLFRTHMKIHKTTSDA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -