Bhyb017413.1
Basic Information
- Insect
- Bolitophila hybrida
- Gene Symbol
- -
- Assembly
- GCA_027564075.1
- Location
- JANSTU010050541.1:1945-4358[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 7.2 4.4e+02 1.8 2.2 3 23 160 181 159 181 0.95 2 14 0.16 10 7.0 0.3 1 23 186 207 186 207 0.89 3 14 0.00086 0.052 14.2 0.8 1 23 235 258 235 258 0.94 4 14 0.00038 0.023 15.3 1.9 1 21 264 284 264 287 0.95 5 14 5.7e-06 0.00034 21.0 0.7 1 23 293 315 293 315 0.98 6 14 8.6e-06 0.00052 20.5 1.1 1 23 334 356 334 356 0.98 7 14 0.00025 0.015 15.9 0.1 1 23 362 384 362 384 0.98 8 14 0.021 1.3 9.8 0.3 2 23 426 450 425 450 0.95 9 14 1.2e-06 7.4e-05 23.1 4.6 2 23 459 480 458 480 0.97 10 14 8.4e-06 0.00051 20.5 1.0 1 23 485 507 485 507 0.98 11 14 1.5e-06 9.2e-05 22.8 4.7 1 23 513 535 513 535 0.98 12 14 0.00011 0.0067 17.0 5.2 1 23 541 563 541 563 0.99 13 14 0.0017 0.1 13.2 0.3 1 23 569 592 569 592 0.92 14 14 4.2 2.5e+02 2.6 0.3 2 20 594 612 593 612 0.93
Sequence Information
- Coding Sequence
- ATGAAAGAAATGGCTATAACCACCAACTTCCAAAATCTGTGTCGAACCTGTGGTATAGCAAATAAACAGATGATTCCAATTTTTGCCTTCGACAGTAATCTCGAGGAACAATTTAACTTGGAACCGAAAATTCATCAATATCTTCCTAATATAACAGTAAAAGAATCCGACAACCTTCCTCAAAATCTTTGTGAAGAATGCGTTCGTTTGCTGGTGAAATTCCACGATTTTAGTAAGAAATGTTTCCAAACACAAACACAATTGCAACAAATGCTTCAACAAGAACCAATCGAACCGGAATACATTGAAGAAGAATATATTGAGACTGAAGAGCCAGTAACTAATTATTATAATAAAAATCCCATGACGTCGAAACAATACAATGATCATGTGGAGACAGTTTTCACAACTGAAATTGAAATTCATAAAGAGCGATCATCGCTTGTGTCTCGAAAGTGTATTAAATGGAAAAGGAACTGTTCATTTTGTAGTCAATTATTTCTTACAAAGAGAAAATTCATTGATCATCTCAAAATGCAGCACAGCGACATGATTTTCCACTGTGACGTCTGCGGTGAATATGCATCGCAGACGGATCTTTTGAAGCACATGGGTGCCCACGCTTTACTTTTGCAGCGAAAGCAAGATCTTCAAGTTCAAAAACAACCCCAAGACACAAGCATATCAATTAAAGAGAAACCGTTTAAATGCGACAGGTGCTTTAAATCATTTGCGTTTAGAAGTGCTCTATCCTATCACGTAGACGTTGTTCACAAAAATCTAAAAGAATTCGCATGCAAAGAATGTCCTAAGGTATTTGCAAAAAAACGCACAATGGAAAATCACATCCGGTGTATGCACGAGTCAGAGAAGCGCTATCAGTGTCCTGAGTGCGAGAAAAAATTCAAAACTGACTCTGGACTTTATGCTCACAAGAAGGTGCATGTGGACAGCTTTGCGTTTTCTCAGGCGACGAACATCAATCCGACACTATCACTGTTTGTCTGCAAAGTGTGCAACAAAGCCTTTAAATCAATCAAATACTTAAATAATCACCAAATCTCACACTCAATGTCGGATAACTACGAATGTCCAATTTGCGGCAATGGATTTAATCGTAAATTTAACCGAGACGCCCACATAAGTGTTCACATTGAAGATCACTTATGCACAGTCTGCTGTTTGAGCTTCAGCTGTGCAAGTGCACTAATGCGCCATCGTTCCCAGCATTCTGATATTGAACTTGAAACTGCAGAGCAAACGGAGTCTTTTGTAGAATGCGATGTCTGCGATCCATCAAAAACATTCAAATCAAGACTACTTCTGTACAAGCATACTCAAAGTGAACATGAAAGCCCTGCCACCAATTATTTAATATGCAAAATCTGTAGTAGAACATTCAAATCGAAATCACATTTTGTCCGACACATGAAGACTCATGGACAAGCACATTTTTCGTGTGATCTATGTCCAAAAGAATTTATAAGTAAAGAAAAGTTAACGGAACACAAACGCACCCATACCGATGAGCGTCCTTATCCCTGCAAACATTGTACAAAAACGTTTCGCTATAAAAGTAATCTCATACAGCATACAATGTCACATACAAATGATCGTCGCTTCAAGTGTGAGCACTGCCCTCTTTCGTTCTTTCGAATTCATACACTTCGTGAGCACTTACGTACTCATATGGCTGTGAAACCGTTCAAATGTGAGTTCTGTATCAAAAGCTTCACCCAGCAAGGCGTTCTTAGAAAACATGTAGCTGCTGTACATAAGAGTTGCCCGGAATGCTGCAAGGTAATCGGTAATAACACAATGCTTCAGGTTCACTTGTGGAAGGGTTGTATGCCATAA
- Protein Sequence
- MKEMAITTNFQNLCRTCGIANKQMIPIFAFDSNLEEQFNLEPKIHQYLPNITVKESDNLPQNLCEECVRLLVKFHDFSKKCFQTQTQLQQMLQQEPIEPEYIEEEYIETEEPVTNYYNKNPMTSKQYNDHVETVFTTEIEIHKERSSLVSRKCIKWKRNCSFCSQLFLTKRKFIDHLKMQHSDMIFHCDVCGEYASQTDLLKHMGAHALLLQRKQDLQVQKQPQDTSISIKEKPFKCDRCFKSFAFRSALSYHVDVVHKNLKEFACKECPKVFAKKRTMENHIRCMHESEKRYQCPECEKKFKTDSGLYAHKKVHVDSFAFSQATNINPTLSLFVCKVCNKAFKSIKYLNNHQISHSMSDNYECPICGNGFNRKFNRDAHISVHIEDHLCTVCCLSFSCASALMRHRSQHSDIELETAEQTESFVECDVCDPSKTFKSRLLLYKHTQSEHESPATNYLICKICSRTFKSKSHFVRHMKTHGQAHFSCDLCPKEFISKEKLTEHKRTHTDERPYPCKHCTKTFRYKSNLIQHTMSHTNDRRFKCEHCPLSFFRIHTLREHLRTHMAVKPFKCEFCIKSFTQQGVLRKHVAAVHKSCPECCKVIGNNTMLQVHLWKGCMP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -