Basic Information

Insect: Bolitophila hybrida
Gene Symbol: salm
Assembly: GCA_027564075.1
Location: JANSTU010042145.1:96-7839[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 5.9e-06 0.00036 21.0 0.9 1 23 341 363 341 363 0.98

2 9 1.2e-05 0.0007 20.0 2.1 1 23 369 391 369 391 0.98

3 9 0.074 4.5 8.1 3.1 2 23 676 697 676 697 0.97

4 9 3.2e-08 1.9e-06 28.1 1.0 1 23 703 725 703 725 0.98

5 9 0.00029 0.018 15.6 3.2 1 23 735 757 735 757 0.98

6 9 0.0048 0.29 11.8 2.0 2 23 990 1011 989 1011 0.97

7 9 4.7e-08 2.9e-06 27.6 1.7 1 23 1017 1039 1017 1039 0.99

8 9 1.5e-05 0.00092 19.7 6.2 1 23 1224 1246 1224 1246 0.98

9 9 4.7e-07 2.9e-05 24.4 0.2 1 23 1252 1274 1252 1274 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	5.9e-06	0.00036	21.0	0.9	1	23	341	363	341	363	0.98
2	9	1.2e-05	0.0007	20.0	2.1	1	23	369	391	369	391	0.98
3	9	0.074	4.5	8.1	3.1	2	23	676	697	676	697	0.97
4	9	3.2e-08	1.9e-06	28.1	1.0	1	23	703	725	703	725	0.98
5	9	0.00029	0.018	15.6	3.2	1	23	735	757	735	757	0.98
6	9	0.0048	0.29	11.8	2.0	2	23	990	1011	989	1011	0.97
7	9	4.7e-08	2.9e-06	27.6	1.7	1	23	1017	1039	1017	1039	0.99
8	9	1.5e-05	0.00092	19.7	6.2	1	23	1224	1246	1224	1246	0.98
9	9	4.7e-07	2.9e-05	24.4	0.2	1	23	1252	1274	1252	1274	0.97

Sequence Information

Coding Sequence: ATGATACAATTTGAAACCGTTAAGTATGGAATTCTGAAAGCTAAGGATACACATAGAAATTCGAAAGGTGACAGCACGAGTTCGTGTTCTGAAGACGATGTCCAATTGGCAGAAACAAATAGTGTAACTAGTGAACAGTGCCACGATACATTTGATGACGCTCGTGTTGTGTCATTAAGAATGGACACTGAAATTGAATCCGAAGAGTTTCACGATAGCGACGCCGAAGACATGATGGAACATCATCATCCACATAATTTGATGATTGACAATAAGGTTTCCAAGCATAGCGAGGATGCGGCCAACAATAATGGTAGTAATGATGTGGACGATGACGTCGATAAGTCTGATCATGGTGATCATACCGAGGGTGCTGTTGCCCCCGGATATTTTTCACTAGAAGCTCTACAGAAAATGGCACATTTCGTATCGGCTGCCATGGCCACAAACAGTGACAATGAAGATGCCCAAAAACAGCTGGCTGTTCTACAGTCTACACTGTTCACGCTCCAACATCAGCAATTATTTCAGTTGCAATTGATTCAGCAACTTCAGTCACAACTTACGATTAATCGATCCGACAAAGATGAAAACGAAGATGATGAAGAAGAGGAACGTGAAGAAGGTGAATTAACAGCTGCTCAAATGGCCGAAGAACAGCGTAAGTATGAAGAAGAACAAAAGCAAATCCGAAAGGAAGAAGAAGAAAGACTTTTGGCTAAGCGTGCTGCTGAGAAGGAAAGCGATGGTTCACAGCCACTCAATCCAAACGCAACATCGTCCGTACCTAATGATACGATCTCAGCAATGGAGGCATCATTTAGTTCTTCATTTGCATCAACAATCATAACCAATCATGATCAACCATCATCTATGGATGGTTTGAACAGCTTAGAAATGCTTCAGAAACGTGCTGAAGAAGTACTTGATTCAGCTTCACGTGGGATTTTGTCAGGTAGTCTTACAGACGAGATGTCCTTCAAGAATGACGGTAAAAATCGTAACGAACCATTCTTTAAGCACCGATGTAGATACTGTGGCAAAGTTTTCGGATCAGATTCAGCACTTCAAATTCACATTCGTTCCCATACCGGTGAACGACCCTTTAAGTGCAATGTATGTGGCAGTCGGTTCACCACTAAAGGAAATCTCAAAGTGCACTTTCAAAGGCATACACAAAAATTCCCACACATTCATATGAATCCGAATCCGATTCCAGAGCACTTGGATAAATTTTATCCGCCTCTGTTGCCTCCACTACCACCCGGCCAACAGCCTCCATTGTCACCACCACCACCACCTGCACAACCGTCAAACCGACCACCACAACCTATGCAAATGCCCTTTCCACCAATACCCGGTCTGCCACCAGGTATGCAAGGATTCCAAGGTATTCCAGGTTTGCCAATGTTCCGACCACCTTTCGAATTACTCAAACAGATGGGTGCTCATCCTTTCTTTGGCGCAATGCGTGATGCAGTACAAAATGAGATGTCTGAACATCAGAATACATCTGAACAGATTACAGAAGAACCCGCAGAGCAACAAACCGAACAGGATGCACCAGCTGATCTCAGTAAACATGCCGATCTGTCTTGTCCGATAATCAAAGAAGAACCAAAAGAGGACGAACCTTTGAGTCCGCCCCCTAAACAATTTAATGACATTATCGATAATCACCGTCATCGCAGTGTATCACCACCCGAACAGTGGCAAGAAGAGAAAAATGAATGTACATCACCCTCTAAGAGTGTTGAAGACTATCCTCACCACCATACAATCAAAGAACAGCCTGAGAATCTATCTAAAATGTCTACCAAACTGTCTCCGAGCAGTTCGGGTTCAACGCGTGAAAATCACCAATTTGAAAACCATCAAGAAATGAAATTATATCCATCAATGATGCCGCGTCCTGGTAGTACAGACAATTCATGGGAGAGTTATATCGAAGTGGACAAATCTTCAGAGACATCAAAGCTTCAACAGCTTGTCGACAATATAGAAAATAAGATAACAGATCCAAATGAATGTGCTGTCTGTCACAAGGTCCTATCTTGCCGCAGTGCTCTacaaatgcattatcgtactcacaccggcgaacgtcccttccgctgtaagatctgtgggcgcgcttttacgacaaaaggtaacctcaagacacacatgAGTGTGCATCGTATGAAACCACCTATGCGAACAATTCATCAGTGTCCCGTATGCCACAAGAAGTACTCAAACTCATTGGTACTTCAACAGCACATCCGACTACACACTGGCGAACCAATCGACTTGACTCTAGAACAGATTCAAGCTGCTGAAATTCGTGATTTTCCCTCTCTTTCTCCGGGATCCTTCCCGATGGGTATGAATCCATTTGCATTCCCTATTCCTGGTATGCATCATGGTGCTATGGGACCTGAGTCATCAAACGGTGACAACGATGACTTTATGGACGAGGACTTTGATGATAACAGCAACTACGACGAGAATATGTCCAACGCAGACTCTGTTTCTGGTGACTCAAATCAAAACATATCAACACCCTCACGACCACCCACCGAGGAGCCCAATCAGTCGCGGTCCATTAGTGCAATGCTAGCCGAACACCGAAAATCCGTAGAATCCGTAACAAGAGCACCGTCAGCCATAAGTCATGCAGACAGTTTGGACGACAAAAGTCTAAGTCCACGCATGCCAATGCAACCATCTCCAGCTCCGTCGGACATGTCTCAAGGTGCCCTAGACTTGACCCCGCGTTCTGAATCAAAGCTAAGTCCACCGCAAGTGTTGCCGCCACCACCGGCTGCACCAGCTGCCGGTCTATCCGGATTTCCAACATTTCCATTTATGTCACACGTGAATGGCACCTCCCCAATGATGTCAAACGCCCTTAACTCACTTGCCCAGTCTGTTTCGCCGATGGGACCATTTAACCCGATGTCCATGTCAGGCATACGCGGCAACACAACCTGCAAGATTTGCCTGAAGACGTTTGCGTGTCAGTCTGCGCTTGAGATACACTATCGCAGCCACACCAAGGAACGGCCATTCAAATGCACCATTTGTGATAAAGCATTTACTACCAAGGGCAACATGAAGCAGCACATGATGACGCACAAGCTGCAAAGTATGCCACATCATAATATGTTCGGTGCGGGCTCTAAGCCACTGGACCCAAACAGTATGTCACCAGAACCCAAAGACTTTCCACAAATTCGCATTAAATCCGAATGTGAGCTGAGTCCACGAACGCCAGAGAATATACCAATCAACCATACAGTAGATCGTCATGACATTCAAGATATGCCCCTGCCACCACATTTCCTTCCACACCCTGATTACCCGCACATGCCTGAGCGTCATCCTATCAAAACAGAGACCAGACTCAAGCGATCGCCGTCTGACATCGAGCAGCCAAATCCCAAAAGAATTCTAGTGTCTGAGACTCACGCACAAGAACTTCCCGCATCAAACATGAAAGATAGTTTCCATATGCCACCACAACAACAACAACAACATCCGGCCGAGGATAAATCATCATCCCATTTAGAGCGACTCCAACAATTTCACACATCTTCTCTTTTAAATCAGCCACTGAAAATGGAAGCACACATGAAGCCAACCGTTTCGCCGGGCTCTGATAACATTGGTGGCACTGGTGATCAGaaacactattgccatctgtgccagaagaattttagttcaacgtcttcgttgcaaattcacatgcgcacccataccggtgaacgtcccttcgtctgcaatgtttgtcagaaggccttcactactaagggtaatctcaagGTTCATATGGGTATTCACACGTGGAGTGGAGCGTCTCGACGTGGCAGGCGAATGTCATTGGAACTACCATTTAATGGATCCATGCCGTTGATGCTGCAAAATCCAGACTTCCTGCAGCGTCACTCCGACTTTTTTCATCCATATCCACCGACTCATCAACTAATGGGTCGCATTGGAATGGAACAGCCAAAGTTCGATCGGGGGGCACCTTCAATAATGAATCTCGCTCACAAGTATATGGGTGCCAATGGAATGTCTGCACATCAGCTGTCCGGTCACATGGACGGTGTACGTCACCCTTACAATTCCTCTCCGTCACCAAACAGTGACAAACAGCAGGTGTCGCCACATAGTATGCGTGATGAGGCTATGCTTGAATCGCCAAAACGAAATGGTGATCATTCACCAGCACGTACCGCCACACCTGATCTGTCTCCGCGACTCTGGAAACTACACTACGAGAGCAAAGCTCTCAATAGAGACAATCTTGAAGCGAAAAGCAAAAAACAGTCCAAGCCAATTGAGGAGTTATTTGCATAA
Protein Sequence: MIQFETVKYGILKAKDTHRNSKGDSTSSCSEDDVQLAETNSVTSEQCHDTFDDARVVSLRMDTEIESEEFHDSDAEDMMEHHHPHNLMIDNKVSKHSEDAANNNGSNDVDDDVDKSDHGDHTEGAVAPGYFSLEALQKMAHFVSAAMATNSDNEDAQKQLAVLQSTLFTLQHQQLFQLQLIQQLQSQLTINRSDKDENEDDEEEEREEGELTAAQMAEEQRKYEEEQKQIRKEEEERLLAKRAAEKESDGSQPLNPNATSSVPNDTISAMEASFSSSFASTIITNHDQPSSMDGLNSLEMLQKRAEEVLDSASRGILSGSLTDEMSFKNDGKNRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTQKFPHIHMNPNPIPEHLDKFYPPLLPPLPPGQQPPLSPPPPPAQPSNRPPQPMQMPFPPIPGLPPGMQGFQGIPGLPMFRPPFELLKQMGAHPFFGAMRDAVQNEMSEHQNTSEQITEEPAEQQTEQDAPADLSKHADLSCPIIKEEPKEDEPLSPPPKQFNDIIDNHRHRSVSPPEQWQEEKNECTSPSKSVEDYPHHHTIKEQPENLSKMSTKLSPSSSGSTRENHQFENHQEMKLYPSMMPRPGSTDNSWESYIEVDKSSETSKLQQLVDNIENKITDPNECAVCHKVLSCRSALQMHYRTHTGERPFRCKICGRAFTTKGNLKTHMSVHRMKPPMRTIHQCPVCHKKYSNSLVLQQHIRLHTGEPIDLTLEQIQAAEIRDFPSLSPGSFPMGMNPFAFPIPGMHHGAMGPESSNGDNDDFMDEDFDDNSNYDENMSNADSVSGDSNQNISTPSRPPTEEPNQSRSISAMLAEHRKSVESVTRAPSAISHADSLDDKSLSPRMPMQPSPAPSDMSQGALDLTPRSESKLSPPQVLPPPPAAPAAGLSGFPTFPFMSHVNGTSPMMSNALNSLAQSVSPMGPFNPMSMSGIRGNTTCKICLKTFACQSALEIHYRSHTKERPFKCTICDKAFTTKGNMKQHMMTHKLQSMPHHNMFGAGSKPLDPNSMSPEPKDFPQIRIKSECELSPRTPENIPINHTVDRHDIQDMPLPPHFLPHPDYPHMPERHPIKTETRLKRSPSDIEQPNPKRILVSETHAQELPASNMKDSFHMPPQQQQQHPAEDKSSSHLERLQQFHTSSLLNQPLKMEAHMKPTVSPGSDNIGGTGDQKHYCHLCQKNFSSTSSLQIHMRTHTGERPFVCNVCQKAFTTKGNLKVHMGIHTWSGASRRGRRMSLELPFNGSMPLMLQNPDFLQRHSDFFHPYPPTHQLMGRIGMEQPKFDRGAPSIMNLAHKYMGANGMSAHQLSGHMDGVRHPYNSSPSPNSDKQQVSPHSMRDEAMLESPKRNGDHSPARTATPDLSPRLWKLHYESKALNRDNLEAKSKKQSKPIEELFA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -