Bhyb018583.1
Basic Information
- Insect
- Bolitophila hybrida
- Gene Symbol
- -
- Assembly
- GCA_027564075.1
- Location
- JANSTU010001277.1:34-4904[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.76 46 4.9 0.4 3 23 36 57 34 57 0.90 2 26 1.6 95 3.9 0.2 3 19 62 78 61 83 0.92 3 26 5.8 3.5e+02 2.1 0.2 1 23 86 109 86 109 0.94 4 26 5 3e+02 2.3 3.6 3 23 114 135 112 135 0.94 5 26 0.072 4.4 8.1 0.4 2 23 160 181 159 181 0.95 6 26 0.027 1.6 9.5 0.0 2 23 246 268 245 268 0.92 7 26 7.1 4.3e+02 1.8 0.7 6 23 280 298 278 298 0.70 8 26 0.0064 0.39 11.4 0.7 3 23 437 458 436 458 0.96 9 26 0.013 0.77 10.5 0.4 2 23 467 489 466 489 0.95 10 26 5 3e+02 2.3 0.5 1 23 533 556 533 556 0.87 11 26 0.00032 0.019 15.5 0.4 3 23 567 588 566 588 0.95 12 26 0.0014 0.084 13.5 0.1 1 23 599 622 599 622 0.95 13 26 0.17 10 6.9 0.0 2 23 699 721 698 721 0.94 14 26 0.017 1 10.1 0.4 3 23 893 914 892 914 0.98 15 26 0.18 11 6.9 0.4 2 23 923 945 922 945 0.95 16 26 0.00031 0.019 15.6 0.3 3 23 1023 1044 1022 1044 0.93 17 26 0.069 4.2 8.2 0.1 1 23 1055 1078 1055 1078 0.89 18 26 0.043 2.6 8.8 1.4 1 23 1119 1142 1119 1142 0.93 19 26 0.00081 0.049 14.2 0.5 2 23 1180 1201 1179 1201 0.97 20 26 8.9e-05 0.0054 17.3 0.9 2 23 1207 1228 1206 1228 0.97 21 26 3.2e-06 0.00019 21.8 4.3 1 23 1233 1255 1233 1255 0.98 22 26 0.00074 0.045 14.4 5.8 1 23 1261 1283 1261 1283 0.97 23 26 4e-06 0.00024 21.5 1.7 1 23 1289 1311 1289 1311 0.98 24 26 2.7e-06 0.00016 22.0 1.4 2 23 1318 1339 1318 1339 0.98 25 26 3.6e-05 0.0022 18.5 3.5 1 23 1344 1367 1344 1367 0.95 26 26 0.036 2.2 9.1 0.4 2 23 1374 1395 1373 1395 0.96
Sequence Information
- Coding Sequence
- ATGGAAGTCGATTTAATTCTTGTAAAATCAGAGACACTGGATACGGAATGCAATATACCAAGCAGCGGACTGGACACGAGCAAACTAAGCGGAACCACACATCTGTGTGAAATCTGCAATGATGTGTTTATCAATAAATTTAAGTTGGCTGGACACTATGTGATAAACCATAATTTCAAGTTCTGTTCAATCTGTGGCATGTTGTTCGTAAATCTATCCGATAAAGAGGCACATGACAATGAATTTCACGTTTTGTTTAAGTGTGTTGAATGCTCGGATATACTCAACGATCATCCCACTTTCAAGGCACATCTCATTGTTGAACATGATTCCAAGTGCTGTGAGTACTGCCATACGATAATAAACACGACCGATTTGTATGTTGAACATATGACAAGACGTCACTTAGTACCCAAGAATCTTACAGATGCTATTGACCATTCTGCTTCAATTTTTGAGAATTTAGACACAAATGTGAAGTGTAACTTGTGCGAGAAGACTTATCAACCAGTTCAACTATTTGGACATTTAATGTACTATCATAATATATCTCTGGGACCTGTTCTGACGTATCTGATAAAAAACAACAAATTTACGGTTAAGCTGTTTACGGTAGAACCTTCAGTAGATCCGTTGTCTACATTGGTTTCTACAGACACATGTGAAGTTTGTTTTCACAAATTCTGCGATATTGCTGGACGGGCAGCTCACGACATCTTTTGTCGTGATATAATGCGCTGTGTAGAGTGTGACTCTTCGTTTTCAGATTCTTGGGACCTGGTATTGCATGCAGATAGCGTGCATATTTCTGATCAGATAATAGAAAATCACAAAATATGTCCTTTGTGTAAAGTCACTACGTCCACGTTATACAAACATCTCAAGAAAGTACACAGAGTTAATCATAAGATACTGGCAGCGGCTCACGACCAAAAAAGGCTTTTTTCTACCACTATGACTACGTATATGAAGGTTAACTGTCTGTTTTGTTGTACAGAACTAACAGAATACATGGAAGATCTGTCAAAACTATTAAACCACTATCATGAAAGACATTTTGCTGATATTGCGTACATCTGTCGTCGTCTAGAAAAAAATCCATGTTTGGAGTTAGGCATAACAAATCGCAAAGAAGAATTAATTAAGGAAATCGAATTGCCGGATAATAGTGTTATTACTGAAAACAATGCGGTGAATGAATCTATAATTTATGATACTAGCCTTGTGTCCTGCATTGCGTCTACCGACGAAGATTCTGGACCAGAAGATGACTCAAATATACCTACCAGAAGAAAAAATATGGGTGCGTGTCCTTACTGCCAGACAAAAATATTCACTCAGAAAACATTATTTTTACACATGAAAACGGCACATGGCTTCAATTGTCCGAACTATTTAAATTGTCCAATGTGTTATGGCAACTTCTCTCAGATTAACAGTTTGCGAAAACATCAGCTGAGAATACATCCAAAGGATATCGGTATTTTACATTGCCCCTTCTGTGAGGTAACAGAGAAAAAGAGACGTGATATGAGGTTTCATATTGCTGAGCATGTGGACCAATTGGAAAGACGATGCACCTCATCCCGTATAGGATTCAAATGTAGATTTTGTCCTGAATTCTTTTGGACAGCCCTGCAAAAGAACGAGCATATTCTAAGCATACACAGCTCTGAAGCGGATGAATTCGTTATGTTGTGCAATATATGTGGTTTATCATTTATAAGCAAGACTAGTTTTCGAATGCACATGTCTGCGGACCATTCTGCGGCACTACAAATTGGATGTGCTGCCTATAAGTGCAATATCTGCAAATTATCATATGCTAGTCTATCTGATGTGAGTGCTCATATTCTAGAAAGTCATCCTAAGAATAAAATGGATGAAATGGAGCAAATTCTCAAGAACGAACACAACAATACAAAACACGACGTAATGGAAGACAATAAAACTTCACAAGAAATGCTTATGGTAGATGCCCCCTTAGAGCCATTATCATCATTTCAGTCAGCGGATACATGTGATGTTTGTTATCACAAATTTTGCGATATTGCTGGACCGGCAGCCCACGACATCTTCTGTCGTGATATAATGCGCTGTGTAGAGTGTGGCTCTTTGTTTTCAGATGCTTGGGAACTGGCATTGCATACGGAGAGTGAGCATACTTCTGCTACGATTGACAAAGATCACGACGCATGCCCTTTGTGCAAAGTCACCACATCCATATTGGACGAACACCTCAAGAAAGTACACCAAGTTGAGAAAAAGATACTGGCAGCGGCTAACGATCAAAAACGTCTGTTTACCACAATTATAAATGCGTACACGTATACGAAGGTCATCTGTATGTTTTGTACTACTGAATTAACGGAACACATGCAGGATCTATCACGATTATTGAATCACTATCGTGAATACCATTATGCTGACACTGAGTACATCTGTCGCTTTTTAGGAAAGAATCCAATTCTAGAGTTATGCATAACTAAGCGTAAACACGATTTGCTCCAGAAAATCAAAGTCAAAGACTTGCCTAACTTTTTTGACATATCTACGTTACCTGATTTTCAAATAGATTACGATACAAGCCTTTTATCATGCATTGCGTCTACCGACGAAGATTCTGGACCGGAAGATGACTCAAATATACCTGCCAAGAGAAAAAAGATGATTTTGTGTCCTTTCTGCGATACAAAAATATACTCTCAGAAAACACTACTTTTGCATATGCAAACGGCACATGGATTCATTTGCCCGAACTTTTTAATTTGTACATTATGCAACGGAAACTTCGCTATGATTACCACTCTAAGAAAACACCAGTTGAGAATGCATCCGATTCCAAGTGGTATTTTACATTGTCCCTTTTGTGAGGTAACTGAGAATAAGAGACGTGAAATGAGGTTTCACATTGCACAGCATGTAGACCAATTGGACAGACGATGTACTTCATCCCACATTGGATTCAAATGTAGATTTTGTCCGGAATTCTATTGGACAGCTATGCAGAAGAATGAGCACACACTAAACATGCACGCTACTAAAGCCGAAGAGGTGCTCATGTTGTGCAACATATGTGGGGCATCCTTTACTAGCAAGACTAGTTTACGCCTTCACACTTCTGCGGCTCATTCTACAGCACCACAGTTTAAAAGTGCAGTCTTCAAGTGCAACATCTGCAAATTATCATATGCTTCATTGTCTGATGCTGGTGCTCATGTTCTGGAAAGGCATCCAAAGAACAAACAGATGTACTGTGCTGAACTTCAGTGTAGAATTCGAATAAAAGATGATAATGAATTGAAATTGCATATAAAGAATGTACACAGCAATACACCAAAGCAATCACTATCTTACAATTGCAAAAACTGTCCAAAGGAATTCAAGACTGACCAGCAAGCTCTAGACCACTACAAAAATACACATGCTGTGAACCATGTTCATATTTTTCGCTGTAAATTTTGCCTTAGTGATTTTCAGACCGACGAGGATCGTCGACTTCACTATGAAACAGATCACGTAAATGATTATATTTGCAAGTGCGATGAATGCGGTATGGGATTACGAGGCAAAGCTGCCCTGTTGTCGCACATGCGTAAGCATTCTAAAACCTTGCAAGTGTGTCCACATTGCCAAAAGACTTTTGAACGTGTTGAGCAATACAATACACACATATTGATTCACGGAGAAATTACGCATCAGTGTTTATACTGTCCAAAAACATTTAAGCAGCGATCAAACTATAACCGTcaccaactaatacataccggcgagaaaccttacaagtgttcatactgcgatagaatgttcagtcaTCAAAATACTGTCAAAAAGCACGAAAAATttcataccggtggaaaattgtttgtatgtgacatttgtgacaaagtgtatacattcaagaataaattggcccatcatatgcgaattcatactggcaagaatctggaaacttgcgagatatgccagaaagtgtttacAAATAAGAATAGTTTGCGATTGCACATGCAGTCGCACAGTGGTAATTGGCACAGATGTACTATGTGCGGCGAAACATTTTCACGTGATTATAAATTGCGGAGGCATATGGAAAATAAACATGCAACAAAAGAGATAACGCCTTGTCCAATCTGTGCCGAGTGTTTTTCCAGTGACCTTATGATGCGAGATCATATTATGAAACATGGTAACGGTCAGCATGTGTGGTGTTTAATGTGTGATTTCAAGTGTGATACTCGTTCCAAAATGCATACACATTTGGATATTATACACAAGGAGGTAAATAACAAAAACACAATTTCCGAGTTTTATAAGGTTCGTACGCCTGAAGAGGAAGGTCTGCTGATGTCACAGGATGAGTTTACGATGCAGGTTTCTATTAAAGAGGAAGTAGAAATGCAGATATCAGCTTCTGATGAAGATTAA
- Protein Sequence
- MEVDLILVKSETLDTECNIPSSGLDTSKLSGTTHLCEICNDVFINKFKLAGHYVINHNFKFCSICGMLFVNLSDKEAHDNEFHVLFKCVECSDILNDHPTFKAHLIVEHDSKCCEYCHTIINTTDLYVEHMTRRHLVPKNLTDAIDHSASIFENLDTNVKCNLCEKTYQPVQLFGHLMYYHNISLGPVLTYLIKNNKFTVKLFTVEPSVDPLSTLVSTDTCEVCFHKFCDIAGRAAHDIFCRDIMRCVECDSSFSDSWDLVLHADSVHISDQIIENHKICPLCKVTTSTLYKHLKKVHRVNHKILAAAHDQKRLFSTTMTTYMKVNCLFCCTELTEYMEDLSKLLNHYHERHFADIAYICRRLEKNPCLELGITNRKEELIKEIELPDNSVITENNAVNESIIYDTSLVSCIASTDEDSGPEDDSNIPTRRKNMGACPYCQTKIFTQKTLFLHMKTAHGFNCPNYLNCPMCYGNFSQINSLRKHQLRIHPKDIGILHCPFCEVTEKKRRDMRFHIAEHVDQLERRCTSSRIGFKCRFCPEFFWTALQKNEHILSIHSSEADEFVMLCNICGLSFISKTSFRMHMSADHSAALQIGCAAYKCNICKLSYASLSDVSAHILESHPKNKMDEMEQILKNEHNNTKHDVMEDNKTSQEMLMVDAPLEPLSSFQSADTCDVCYHKFCDIAGPAAHDIFCRDIMRCVECGSLFSDAWELALHTESEHTSATIDKDHDACPLCKVTTSILDEHLKKVHQVEKKILAAANDQKRLFTTIINAYTYTKVICMFCTTELTEHMQDLSRLLNHYREYHYADTEYICRFLGKNPILELCITKRKHDLLQKIKVKDLPNFFDISTLPDFQIDYDTSLLSCIASTDEDSGPEDDSNIPAKRKKMILCPFCDTKIYSQKTLLLHMQTAHGFICPNFLICTLCNGNFAMITTLRKHQLRMHPIPSGILHCPFCEVTENKRREMRFHIAQHVDQLDRRCTSSHIGFKCRFCPEFYWTAMQKNEHTLNMHATKAEEVLMLCNICGASFTSKTSLRLHTSAAHSTAPQFKSAVFKCNICKLSYASLSDAGAHVLERHPKNKQMYCAELQCRIRIKDDNELKLHIKNVHSNTPKQSLSYNCKNCPKEFKTDQQALDHYKNTHAVNHVHIFRCKFCLSDFQTDEDRRLHYETDHVNDYICKCDECGMGLRGKAALLSHMRKHSKTLQVCPHCQKTFERVEQYNTHILIHGEITHQCLYCPKTFKQRSNYNRHQLIHTGEKPYKCSYCDRMFSHQNTVKKHEKFHTGGKLFVCDICDKVYTFKNKLAHHMRIHTGKNLETCEICQKVFTNKNSLRLHMQSHSGNWHRCTMCGETFSRDYKLRRHMENKHATKEITPCPICAECFSSDLMMRDHIMKHGNGQHVWCLMCDFKCDTRSKMHTHLDIIHKEVNNKNTISEFYKVRTPEEEGLLMSQDEFTMQVSIKEEVEMQISASDED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -