Bhyb005009.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bolitophila hybrida
Gene Symbol
-
Assembly
GCA_027564075.1
Location
JANSTU010001335.1:1-2879[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00034 0.021 15.4 3.6 2 23 39 60 38 60 0.94
2 16 4.9e-06 0.0003 21.2 4.7 2 23 97 118 96 118 0.97
3 16 0.00035 0.021 15.4 1.8 3 23 188 208 186 208 0.97
4 16 0.003 0.18 12.4 0.6 1 23 243 265 243 265 0.97
5 16 0.00011 0.0068 16.9 0.8 1 21 330 350 330 351 0.96
6 16 4.1 2.5e+02 2.6 8.2 1 19 378 396 378 400 0.93
7 16 0.0061 0.37 11.5 0.1 1 23 410 432 410 432 0.97
8 16 0.014 0.86 10.3 7.4 2 23 533 554 532 554 0.96
9 16 0.76 46 4.9 4.4 3 23 591 611 591 611 0.98
10 16 0.015 0.89 10.3 0.3 1 23 617 639 617 639 0.97
11 16 2.4e-06 0.00015 22.2 0.8 1 23 651 673 651 673 0.98
12 16 5.1e-05 0.0031 18.0 0.7 1 23 680 702 680 702 0.98
13 16 5.7e-06 0.00035 21.0 4.1 2 23 709 730 708 730 0.97
14 16 0.00045 0.027 15.0 1.4 1 23 736 758 736 758 0.98
15 16 5.6e-07 3.4e-05 24.2 2.8 1 23 764 786 764 786 0.99
16 16 0.12 7.1 7.4 0.5 3 20 795 812 794 813 0.96

Sequence Information

Coding Sequence
ATGGATATCGATATACCGAAACCGGCGTTTTGTTGCATATGTAAAAATGAACTCTTCGATCTATGTCGGCTTGAAGACGAAATCCAAATAGAATATCTCCTTGGAAAAGGGTGTACTTGCCATATATGCTACAAGCAGTTTAAAAGTCCAGATGATTTGATTAACCACGAAAAGGACCACCTAAACAATTCTCATAGAATTGCATGTATACAGTGTACTTCTAAAGGTAAGAGTTTCTTTGAATTGATTGCAGACAACACAGCAAATGGCATAAAGCTACGTCCGCAACAATGCCACTTGTGTCAGAAGCGCTTTACAAGAAAAGAATATTTGCAAAATCACATTCGCAACCATCTGGACCGCACCGTCTACGATTGCATTCATTGTGGCAATCAATTTATCGGAGAACAGAAGTATCAAAGTCACCTTAATGCGTGTGGTAAAGATAAAACAAGACATACAAACATGAAATGCGCTCTATGCAGAACGAGACTATTGGATTTGGAGGATTTACGAAACAGTCTTGCTGAATCCTCAGCAACGTTTATTGTGCCAAGCAACTGTCAGATCTGTTTTCGACGTTTCAATACTCGCAATCAACTCATTGATCATCAGCAAAGTCACTTTAATGGTACTTCGAAGGAGTGCAGATTTGCTTGCCAGCAATGCTGCAAATCAATCATTATAACCACAGGGAAATCAATAAAAAATAAATCTGAAGTCCATTATGAGTGTGACTTATGTCAGCAACAATTTATCCAGCGTAGAGAAATAGAACGACACTTTCGAGCACATTTTGATAGAGTGGTTTTTCAGTGTGATATTTGTGAAGGCCTCATTATAGGAAGCATTAACTTTACCAATCATGTGGGTAATCATAAAAATTCTAAATTGAAGCCAAACAACAAAATAAAGAAAAACACTAGCAAGTTCGACGAAGACGAACATTATTTCCAGAAAACTAAAATTTCATCAATTCCTACTAATTTTAAGTGTGATAACTGCTTCCAGGTTTTTAGTCGTAAAGTAGCACTAAGCCGGCATCAGCAACAATGTGAAAAAGAAGCTTTCCAACATGTAAAAACTGAAAAACAGGAAACAATAAACACATCATACCAAGAATCTATAAAGTACTTATGTCCATTTTGTGATACCACATTTAACCAATGTGATACGTGGCAAACGCATTGTCGTTGTCACTTTGAAGATTCGGCCAAGTTTTTCAAGTACGTTTGCTTAATATGCAATCAACAGTTCGAAAACTTATCTTTAATGTCTGCACATGAGATAAGTCACCAAATAAAATCAGAACCAACAATTCATTTAGAGTGTAATCTAGATTCATCGTCAGAACATGAACATGCTGCCGATAATTATGATAGTGAAGAAGAAACTTTAACAACACCTATTCTGAATTCACTTTCCATCGAAATCTATAGTCCGTTGTCCAATCACGAGGAATTCGAAACAGAAAAAAATTGCGAGACATCGCAAAACCTACGTAAAGTAAATTGCGGACTTTGTGGTAAAGAGTCAATTCATGTTTGGCCCACGGATACACAAGTTCATGAAGAATTCACTAGATATAAAGGATGTGTATGCAAGATATGTTTTCGCCATTTTCGCAATGTCAGTTCGTTTCAGAAGCATACTAATTACCATTTCGAGGGTAAAAGTTCTGAAAACAAAATTGCGTGTAATAATTGTTTGATTAATGATAAAGTTTTCTGGAAGCACGACAACCATGCAGCAGAAGTAGCGGATCTTGGATGCCACATATGTTCAAACAAAGTAAAAAAATATAGTTTACTACGTTTGCATAGACGCTTTCACCTGGACCGTGTCGTGTACAATTGTGATGTGTGCTCCAAACCGGTTATCGGAAAGAGTCGCTTTGCACGGCACATGTACAATCATGAAAGTAGCAAAAGATCAGAAGTCCTTGGAGATTTCGagtgcgatgtgtgtaagaaaatatttaacaagaagtcagcattgtcagcgcatatgaagaaccatgtatcgacagaacaacggtttcagtgtcatctatgtcctatatcagttAAGACCAAAGGAAATCTAGTGCAACATCTTAATTTGcacacaggtaaaaaagacgtgacctgtgatttctgtggacatatgttcttccgtaagagtaatttgtttaagcatttgcgaacacatactggtgaacgtccattcgagtgcgaggtctgtctgaagcggttcccatataaacagggattcgaaacacataagcgaacacacactggcgagcgaccatttaaatgtgatcaatgcgataagacttacaaggactattcagatttgcgaaggcataaacgagtgcatggtggtgtggagaagacacacggctgtgatttgtgtggcaaattgttctacgaaaagaaGTTCTTAAAATCCCACCGACTC
Protein Sequence
MDIDIPKPAFCCICKNELFDLCRLEDEIQIEYLLGKGCTCHICYKQFKSPDDLINHEKDHLNNSHRIACIQCTSKGKSFFELIADNTANGIKLRPQQCHLCQKRFTRKEYLQNHIRNHLDRTVYDCIHCGNQFIGEQKYQSHLNACGKDKTRHTNMKCALCRTRLLDLEDLRNSLAESSATFIVPSNCQICFRRFNTRNQLIDHQQSHFNGTSKECRFACQQCCKSIIITTGKSIKNKSEVHYECDLCQQQFIQRREIERHFRAHFDRVVFQCDICEGLIIGSINFTNHVGNHKNSKLKPNNKIKKNTSKFDEDEHYFQKTKISSIPTNFKCDNCFQVFSRKVALSRHQQQCEKEAFQHVKTEKQETINTSYQESIKYLCPFCDTTFNQCDTWQTHCRCHFEDSAKFFKYVCLICNQQFENLSLMSAHEISHQIKSEPTIHLECNLDSSSEHEHAADNYDSEEETLTTPILNSLSIEIYSPLSNHEEFETEKNCETSQNLRKVNCGLCGKESIHVWPTDTQVHEEFTRYKGCVCKICFRHFRNVSSFQKHTNYHFEGKSSENKIACNNCLINDKVFWKHDNHAAEVADLGCHICSNKVKKYSLLRLHRRFHLDRVVYNCDVCSKPVIGKSRFARHMYNHESSKRSEVLGDFECDVCKKIFNKKSALSAHMKNHVSTEQRFQCHLCPISVKTKGNLVQHLNLHTGKKDVTCDFCGHMFFRKSNLFKHLRTHTGERPFECEVCLKRFPYKQGFETHKRTHTGERPFKCDQCDKTYKDYSDLRRHKRVHGGVEKTHGCDLCGKLFYEKKFLKSHRL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-