Bhyb002881.1
Basic Information
- Insect
- Bolitophila hybrida
- Gene Symbol
- -
- Assembly
- GCA_027564075.1
- Location
- JANSTU010048649.1:2347-4359[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.4e-05 0.0032 18.0 0.7 2 23 163 184 162 184 0.97 2 13 0.00037 0.022 15.3 0.7 1 23 188 211 188 211 0.97 3 13 4.1e-05 0.0025 18.3 0.4 2 23 215 237 214 237 0.97 4 13 4.4e-05 0.0027 18.2 0.1 3 23 250 270 249 270 0.97 5 13 1.3e-05 0.00079 19.9 3.1 1 23 276 298 276 298 0.98 6 13 0.0003 0.018 15.6 1.0 1 23 304 326 304 326 0.97 7 13 0.00025 0.015 15.8 1.0 2 23 345 367 344 367 0.94 8 13 0.55 34 5.3 1.3 2 23 380 402 379 402 0.95 9 13 0.00025 0.015 15.8 0.2 2 23 417 438 416 438 0.96 10 13 0.00012 0.0071 16.9 1.1 3 23 443 463 441 463 0.98 11 13 0.012 0.74 10.5 5.0 1 23 470 493 470 493 0.98 12 13 0.0003 0.018 15.6 1.0 1 21 499 519 499 522 0.96 13 13 3e-06 0.00018 21.9 0.9 1 23 530 552 530 552 0.98
Sequence Information
- Coding Sequence
- ATGCCTACCCAACCGAACATCGAAGTAACGAACTTCCGCACAATTTGTCGTTTCTGTTTGCAGGCGAAATCAGATATGTGCACATTGGCAATAGCTGAACAGTCGGGATCATTTGTGCGAAAATATTTCGAGGATATCACAAACCTAACGTTTGATCTACGTGAAGCCATTTTTTCTGAACTTGTATGCGTTCAGTGCAAAAATGATCTCAATGCAGCTGCCAATATGCGCAAACAATGCATCGAAGTCAACGCACTATGGCTGGACTTCATTAAGAACAGATCGTCTGAGATTAATGATATGTTTGTGAAGGAGGAATGCTCTGAAGATCAGACACATTTCGGAGATGATGCAGTTGAAGAACATCCCTATGAAATTAAAACTGAAAATGATTGCTTGCCAGAAGAAGTATCACCGACGGCACCGAAGCCGAAAAGAAGCTATACCAAAAAATGTCAGCGTGCGACTAGGTCAACGCAACCTTTGGAATGTGATTATTGTGGTTTGACATACAAAAACAAAACTACTATTATTCGTCATTTAAAATCTCACATCAATTCGTTTAATTGTGAACAATGCGATGATACATTTGGAAATAAACAGCAGCTATCCTCGCATATTCGACGCATTCATTCAAGTATAAAATGTTCTGTGTGTAAAACAAGCATATCGACCGAAGAGAATCTTCGAATTCATATGCGCCGCGAGCATTCGGACAAAAAAAAAATTAAACGCACTGAAGCCATCTGTAATGTGTGTGGTATTGTATTGTCTGACAATGGCGGATTGCGCAGACACATGTTGCGTCATACATCAGAACCACCATTTAAATGTTCGTACTGCGAAAAAGGTTTCTACAGAAGCATTCACCTGAAGAGTCATCTTTTAGTGCATACTGGTGTTCAAGATCATGTATGCCACATGTGCGGTGAACGTTTTGTGGCTGCAAACTCTTTACTGCGTCATGTGGAAAAGCACCAGAATGGCAACCGTGTCGTCAACACGAATGGCATGAATCGACCGCAAAATCTTGAATGTAAGGACTGTGGTATTGTCTACAAGCATTTTCGATCATTGACAATTCACCGAAAGGAAGTTCACGCAGCTGAAACGCTTAGCGTAAAATCAACAATGTTACAGTGTTTGATTTGCAATGCCAATCTCTCATGTCGAACGGCTTTACGCACACATATTATGACTAAACATCCTGAAAAAGGACCAAACTTTTGGCAACAGATCCTGGACACGGTATGCGTTCGGTGCAATGCAACATTTTCAAGCAAAGCTGAACTCAAAGAACATGTTAAAATACATATGGAATTTGGATGTGACATTTGCAAGAAAAGCTTCGATAATAAAATCACTCTCTCTAGCCATGTAAAGAAACATTCCAATAGCAACAGACCATACACATGTGATATTTGTGGATCGTCACATATTCGTTTGTCACATTTAAAGGTTCATCATCGCAGATTACACACAACGGTCCGCCCGTTTCAATGTGATCAATGTGACGCTCGTTTTCCCGAGAAATGGAACCTTAAAGAACATATTCGATGTGTGCACAGCGAAGTCGAGGAACGTATGTATCCGTGTTCTATGTGTCCGAAGCGATATGGAAAAAGCAGTCAGCTCACAATACATATGAAGAAGCACACCGGTCTATCAAATTACAAGTGTGACCTGTGCTGCAGGGGTTTTTACAGTGGACTACAGTTGACACAGCACAATAACTGTGTGCATCCTGAATTAGACAAATCTTTGAAGTCCGTCGTCTAG
- Protein Sequence
- MPTQPNIEVTNFRTICRFCLQAKSDMCTLAIAEQSGSFVRKYFEDITNLTFDLREAIFSELVCVQCKNDLNAAANMRKQCIEVNALWLDFIKNRSSEINDMFVKEECSEDQTHFGDDAVEEHPYEIKTENDCLPEEVSPTAPKPKRSYTKKCQRATRSTQPLECDYCGLTYKNKTTIIRHLKSHINSFNCEQCDDTFGNKQQLSSHIRRIHSSIKCSVCKTSISTEENLRIHMRREHSDKKKIKRTEAICNVCGIVLSDNGGLRRHMLRHTSEPPFKCSYCEKGFYRSIHLKSHLLVHTGVQDHVCHMCGERFVAANSLLRHVEKHQNGNRVVNTNGMNRPQNLECKDCGIVYKHFRSLTIHRKEVHAAETLSVKSTMLQCLICNANLSCRTALRTHIMTKHPEKGPNFWQQILDTVCVRCNATFSSKAELKEHVKIHMEFGCDICKKSFDNKITLSSHVKKHSNSNRPYTCDICGSSHIRLSHLKVHHRRLHTTVRPFQCDQCDARFPEKWNLKEHIRCVHSEVEERMYPCSMCPKRYGKSSQLTIHMKKHTGLSNYKCDLCCRGFYSGLQLTQHNNCVHPELDKSLKSVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -