Basic Information

Insect: Bolitophila hybrida
Gene Symbol: -
Assembly: GCA_027564075.1
Location: JANSTU010051453.1:7798-10133[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.8e-06 0.00011 22.6 4.6 1 23 269 291 269 291 0.98

2 12 5e-07 3.1e-05 24.3 0.4 1 23 297 319 297 319 0.98

3 12 1.6e-05 0.00099 19.6 1.4 1 23 325 347 325 347 0.99

4 12 5.7e-05 0.0034 17.9 0.4 1 19 353 371 353 376 0.93

5 12 0.00031 0.019 15.5 2.5 1 23 384 406 384 406 0.98

6 12 4.5e-06 0.00028 21.3 1.0 1 23 414 436 414 436 0.98

7 12 7.8e-05 0.0047 17.4 1.3 1 23 442 464 442 464 0.97

8 12 0.00059 0.036 14.7 1.7 1 23 470 492 470 492 0.97

9 12 4.8e-05 0.0029 18.1 2.6 1 23 500 522 500 522 0.99

10 12 0.00011 0.0064 17.0 2.2 1 23 530 553 530 553 0.96

11 12 0.00032 0.019 15.5 0.0 2 23 562 584 562 584 0.95

12 12 0.017 1 10.1 0.2 2 23 590 611 589 611 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.8e-06	0.00011	22.6	4.6	1	23	269	291	269	291	0.98
2	12	5e-07	3.1e-05	24.3	0.4	1	23	297	319	297	319	0.98
3	12	1.6e-05	0.00099	19.6	1.4	1	23	325	347	325	347	0.99
4	12	5.7e-05	0.0034	17.9	0.4	1	19	353	371	353	376	0.93
5	12	0.00031	0.019	15.5	2.5	1	23	384	406	384	406	0.98
6	12	4.5e-06	0.00028	21.3	1.0	1	23	414	436	414	436	0.98
7	12	7.8e-05	0.0047	17.4	1.3	1	23	442	464	442	464	0.97
8	12	0.00059	0.036	14.7	1.7	1	23	470	492	470	492	0.97
9	12	4.8e-05	0.0029	18.1	2.6	1	23	500	522	500	522	0.99
10	12	0.00011	0.0064	17.0	2.2	1	23	530	553	530	553	0.96
11	12	0.00032	0.019	15.5	0.0	2	23	562	584	562	584	0.95
12	12	0.017	1	10.1	0.2	2	23	590	611	589	611	0.96

Sequence Information

Coding Sequence: ATGAATATTAAGATAGATGTAAACGTGTGCCGGGTATGTTTGCAGTCTGGACCTGGCACTTCTATGTTCGAAGAGAATATTTTGGCTGAAAAATTCGAGAACGTCACACAGTTGCAGGTAATTCAAGGCGATGGACTACCGGAATTACTTTGCAAAAAATGCGAGTCCAAGCTCAAGTTGTCCTGGCAGTTCAAGAACCAGAGCGAAACGTCCCAGAACCATCTGGTTAAGTTCATTGCCGAAATGAATAAACAGTTTCAATCCAAAGTGGTCAAACAAACATCTAGACAAATAGAAGATGAAGATTTTATGGAGGATGAACTATTGTACGACACTGATCAGCAACCATTTGAACACCAATCGGATGAACACAAACCGGAAATGGAACGAGAGCCAGAAGTTGCCCGAAAAATTGTACGAATAGATACGTTAAATCGTGTCCAGAAAATAGATGAAATTATTACTCCATCGAATATTCAAATTTCAAATGTAATGCAAATGAAAACGGAGACACATGAAAATTCCGAATATTTAGATGGTCTGGAAACGGTTGATTTTCATAACAGCAAGGAAGAGATTATGCAAGAAGGGGATGAGTCGGTGGATGGTGTTAATTTCGAAGAAGAGGTTATTGATCAGCTTTACGACGAAGAAGATAATGAAGAAGGCATGTTACTAGAAGAGGAACACATCGAAGAGGAAGAGCATTTAAATGAAAGCGTTTACTCAGAACCGGGATATTATATGGATGAAAAGCAAAAATTGTCTGCATCCAGAGGATCCAACAGTGGTCAGGGCACAACACACTCATGCACTAAGTGCAACAAGGACTACAGCACAAAGACCAATTTGATACGTCACATGCAAACACACTATAATGCCAAGCCTTATCAATGTACAGTCTGCGGAAATAGTTTCACCCAAAATGGATCTCTTAAAGCTCATATGTTTATTCATACAGgtgagcgtccttaccagtgtgaagtatgcaatcgagcatttactcagagtaaatcactggtgttccacatgagacgacacactggtgaaaaaccatttgcttgtgacaagtgtgGCCTGGTGTTCCGACAGAAGGATGGTCTCAAGCGTCATGACTTGGTAAAACACTCTGGAATCGGTCCTGCCACATTTCCTTGTGAATTGTGCAATAAAGTACTTCACTCCAAATACTCACTGTCAATGCATATGAAAAAGCATAGCGCCAGCACTGAAAACGAATACAAATGCGACCAATGCGAGAAGACGTTTTCATCACCGGCATCTCTGTCCAACCACAATCGTCAGCACACTGGTGAAAAGCCGTACTCCTGTCCGCACTGTTCACGTCAGTTTGCTCAGAAAGGATCGATGCAGGCACACGCCAAACAGCATCTAGAACAGAAACCGTTTAACTGTCAACTGTGCGGTAAGGGATTCTTGCAGAAACACCAGATTACTGCTCACATGAACATGCACGAAAATCAACCACTGAAAAAGTTCAAGTGTTTGCATTGCATTAAGAGTTTTAGCATCAAGCGAAATCTCATAGCACACATGCGAATGCATAGTACCGGTGAAGTGGAAATGCACAAGTGTGATGATTGTGACATTGCATTTAACACAAAGCGTGGTCTCAAATTACATCGAAGTAAACAACATCCGGAGACCGTCACAAATATCAATGAGTGTGACACTTGCGGTGTCTTTTTCATTACGGCCACAGATCTTAATGCACACATTGCTAGCGAACACGATGCAATTAATATTAGGTGCGAGCAGTGCTCAATGGAGTTTGTCTCGAAGAAAGTCTACGAAGATCATATGCTAGAGCATGATCTCAATAAGATTGCTGTTGCGATATAG
Protein Sequence: MNIKIDVNVCRVCLQSGPGTSMFEENILAEKFENVTQLQVIQGDGLPELLCKKCESKLKLSWQFKNQSETSQNHLVKFIAEMNKQFQSKVVKQTSRQIEDEDFMEDELLYDTDQQPFEHQSDEHKPEMEREPEVARKIVRIDTLNRVQKIDEIITPSNIQISNVMQMKTETHENSEYLDGLETVDFHNSKEEIMQEGDESVDGVNFEEEVIDQLYDEEDNEEGMLLEEEHIEEEEHLNESVYSEPGYYMDEKQKLSASRGSNSGQGTTHSCTKCNKDYSTKTNLIRHMQTHYNAKPYQCTVCGNSFTQNGSLKAHMFIHTGERPYQCEVCNRAFTQSKSLVFHMRRHTGEKPFACDKCGLVFRQKDGLKRHDLVKHSGIGPATFPCELCNKVLHSKYSLSMHMKKHSASTENEYKCDQCEKTFSSPASLSNHNRQHTGEKPYSCPHCSRQFAQKGSMQAHAKQHLEQKPFNCQLCGKGFLQKHQITAHMNMHENQPLKKFKCLHCIKSFSIKRNLIAHMRMHSTGEVEMHKCDDCDIAFNTKRGLKLHRSKQHPETVTNINECDTCGVFFITATDLNAHIASEHDAINIRCEQCSMEFVSKKVYEDHMLEHDLNKIAVAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -