Bhyb008037.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bolitophila hybrida
Gene Symbol
-
Assembly
GCA_027564075.1
Location
JANSTU010030543.1:6899-9747[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 2.8e-05 0.0017 18.9 1.3 1 23 185 207 185 207 0.99
2 13 1.2e-05 0.00075 20.0 3.3 1 23 213 236 213 236 0.95
3 13 0.033 2 9.2 0.1 1 23 239 261 239 261 0.94
4 13 0.0082 0.5 11.1 3.2 2 23 301 322 300 322 0.95
5 13 0.32 20 6.1 2.9 1 23 409 432 409 432 0.97
6 13 0.0081 0.49 11.1 0.3 3 21 441 459 440 460 0.96
7 13 2.8e-06 0.00017 22.0 1.6 1 23 518 540 518 540 0.98
8 13 1.6e-07 9.6e-06 25.9 3.0 1 23 547 569 547 569 0.98
9 13 7.7e-08 4.7e-06 26.9 1.7 3 23 581 601 579 601 0.96
10 13 2e-05 0.0012 19.3 2.8 1 23 607 629 607 629 0.99
11 13 1e-06 6.1e-05 23.4 2.2 3 23 637 657 635 657 0.97
12 13 5.3e-08 3.2e-06 27.4 1.3 1 23 663 685 663 685 0.99
13 13 0.02 1.2 9.8 0.0 1 23 691 715 691 715 0.93

Sequence Information

Coding Sequence
ATGGTCGAAATGGACCTAAACATTGAGTACGATCTAGAAAACATATGTAGATCATGCTTGGGCTACAATGTTTCCCTAACATCGGTATTTAACGACCCGGACAGCGATGACGGCAGCGGCGGTGGCGTTGCAGGCGACACCACCACCACTTCTAATAGCATTGCATTGAATCACATTATTATGGCTTGCACTCAAGTTCAGATACTCAAAGACGATGGAATGCCATACAAAATATGTCCGAAATGTATACGGGAAGTAAATAGTGCATTTGCGTATAGACAAATGTGTGAGACAAGTGATGCAAAACTAAGAAAGTACCTGGAACGCAAATATCCATCGAATGTTAAGATTGAAATTGGCGATTTCATTACTACTGAGGTTATTAAGAACGAAACGCAAGTGGACGGAATCGGGCAAGAGGATGATGAGTGTCCTTTGGCATCGTTTGTTATAAAAGGCAATAATGACGAGCCTGATGACGAACTACTGCTCGGCAACTCCAATAGAACAACGGAAGTACTAAGTGAGGTTGACGATAATCCGTCTGTACAATACAAATGCGATTTATGCAATAAGTTGTTTGTTGACAAGCGATCATTGAGGCTACACGGTAGAACACATTCCGAAAATTCACTGCATACCTGTCCTACCTGTGATAAGACATTCGTAAAGTCTAATCATCTTAGTCGACATATCCTGCAGGTGCATAAGGTGTTTGATTGTGATGTTTGCGATGAGAAATTCGAAAGTGCTGCTGTTAAACGAACCCACATGATAGCTCATAATCAAGCAAAAAAACGTGGTCGACCTGCTCGAAATATCCAGTCAAAAGTCTTAGATACGAAGCCCGTCTATGATGCTTTCTATTGTCTGGGATTGTCAAACAATAGAAAAAAATGTATTTGTATGATATGCAATCAGATGTTCTATAAAATAGCTCATCTCCGTAAGCACCTGTCGATTCATATGACCGATTCGCTATCTTTCGATAACATTGATCTCCAATCCAAGCCAGAGCTGTTTGACTCAGACTCTGTAAATCTTAGAGCACACACAAATATATCGCTGCTTAGCATTATTCAGCAACAGCTTACACTTGGCGAAAACCATCGATTCTATCAGGTTCTGAACAGCTCGGCATGGGAACTTGATCTGGATGATAGCGAGACAGATAGTGATACTGATGAGTTCATTGTGAACGAATGGATGTCACCGTTGCACGAGTACCGGTGCTCTAGATGCTCGTCCACATTTGATCGAGTGCATAAGATTGTAAGTCACATGAAAAACGATCACAGTGTTTCGGAAATGGAAAATCTGTGCACACATTGTCAACGAGTGTTTCCGAACAGTGAGATTCTAGAAAAGCATCTAAGGCTTCAGTGTGAGAATAAAATTAAGAGCATCACATGTTCTCGGTGTCTGGTACGCTTTATGTGGCAGAGTAGTCATGATGACCACGTTCGAATTATGCATTCGGCAGAGACAACAGAATCGGTTGTCGGTACAAATACGACTAAGTCATCGGATGCCAATCCGAAAATTAAATCATTTATGTGTGATATATGCTCGAAGGGATTCATTCGATCCGAACATCTGGAACGACATCGAAAGATTCATGTACCTTCGGAAAAGAAGTTCTCCTGTGACCTGTGCAAGAAAAAGTTCAATCGCAAGGATAATTTAAAGTcacacatgagggttcacaaaccggacaaagaagatggtgataaacacctgtgtgtgtattgtggtcgaagcttttcaaattcttccaacttgatcgttcacatgcgacgacataccggcgagaaaccctacaaatgcgatttatgtgataaagGTTTTCCACGTTCTTCGGACTtgcagtgccatcgacgcactcacactggcgagaagccttgcctttgtacgatttgtggaaaagGTTTCTCGCGTTCAAACAAGCTCGTTCGTcacatgagaattcacactggatccagaccgtacaagtgtacatactgtggtcgagcgtttacacaatcaaatgatctcacgctacacataagacggcacactggagacaaaccgtacgtctgtggcatttgtggcgatcgtttcatccagggaaccgcactggctacacatagacgtatgcaGGGTCATTACGAGGAAGTGACACAGCTGAATAATGTACCTTATGCCAATATCAGCGTAAACAATCCGAATCGATACACGAATGTAAATCGCGTTAATCGTATCGGTGTTTCGGCCATTGTCGATCATGTTACTGTAAAACAGGAACGAGAATCTTTGGGTAAACGGCAGCCATTACATCATACCCTTACCAGTACCAATTGTGATCCGGTTGCTGGTGTGGAAAATAGTCTGAATTCGGCACAGAATAATAATGAGGCACGAATCATTCCTAGTTTTCAACATGCTTCTGCATCAGGACCATTGCCGTACCTGACGAACGGAAATCCATATCAGCTGCACGTTGTCGGTGAGGAACCGTCGACAATGTTTCCGTTGCCCAACTTTAATAATGCGCAGAGCTATAATTAG
Protein Sequence
MVEMDLNIEYDLENICRSCLGYNVSLTSVFNDPDSDDGSGGGVAGDTTTTSNSIALNHIIMACTQVQILKDDGMPYKICPKCIREVNSAFAYRQMCETSDAKLRKYLERKYPSNVKIEIGDFITTEVIKNETQVDGIGQEDDECPLASFVIKGNNDEPDDELLLGNSNRTTEVLSEVDDNPSVQYKCDLCNKLFVDKRSLRLHGRTHSENSLHTCPTCDKTFVKSNHLSRHILQVHKVFDCDVCDEKFESAAVKRTHMIAHNQAKKRGRPARNIQSKVLDTKPVYDAFYCLGLSNNRKKCICMICNQMFYKIAHLRKHLSIHMTDSLSFDNIDLQSKPELFDSDSVNLRAHTNISLLSIIQQQLTLGENHRFYQVLNSSAWELDLDDSETDSDTDEFIVNEWMSPLHEYRCSRCSSTFDRVHKIVSHMKNDHSVSEMENLCTHCQRVFPNSEILEKHLRLQCENKIKSITCSRCLVRFMWQSSHDDHVRIMHSAETTESVVGTNTTKSSDANPKIKSFMCDICSKGFIRSEHLERHRKIHVPSEKKFSCDLCKKKFNRKDNLKSHMRVHKPDKEDGDKHLCVYCGRSFSNSSNLIVHMRRHTGEKPYKCDLCDKGFPRSSDLQCHRRTHTGEKPCLCTICGKGFSRSNKLVRHMRIHTGSRPYKCTYCGRAFTQSNDLTLHIRRHTGDKPYVCGICGDRFIQGTALATHRRMQGHYEEVTQLNNVPYANISVNNPNRYTNVNRVNRIGVSAIVDHVTVKQERESLGKRQPLHHTLTSTNCDPVAGVENSLNSAQNNNEARIIPSFQHASASGPLPYLTNGNPYQLHVVGEEPSTMFPLPNFNNAQSYN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-