Bhyb021669.1
Basic Information
- Insect
- Bolitophila hybrida
- Gene Symbol
- -
- Assembly
- GCA_027564075.1
- Location
- JANSTU010000353.1:3869-5661[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00015 0.0091 16.5 1.1 1 23 78 101 78 101 0.96 2 16 3.6e-05 0.0022 18.5 0.6 1 23 107 129 107 129 0.98 3 16 0.00011 0.0064 17.0 2.6 1 23 135 157 135 157 0.97 4 16 0.077 4.7 8.0 2.1 2 23 164 185 163 185 0.93 5 16 0.00098 0.06 14.0 1.6 1 23 191 213 191 213 0.97 6 16 6.9e-06 0.00042 20.7 0.9 1 23 219 241 219 241 0.95 7 16 1.2e-05 0.0007 20.0 0.3 1 23 249 271 249 271 0.97 8 16 0.023 1.4 9.7 0.1 1 23 277 300 277 300 0.95 9 16 9e-08 5.4e-06 26.7 1.5 1 23 306 328 306 328 0.97 10 16 8.8e-05 0.0053 17.3 1.0 1 23 334 357 334 357 0.96 11 16 4.3e-05 0.0026 18.3 1.3 1 23 365 387 365 387 0.97 12 16 2e-05 0.0012 19.3 0.3 2 22 397 417 396 417 0.93 13 16 0.21 12 6.7 0.2 13 23 448 458 440 458 0.93 14 16 0.65 39 5.1 8.0 1 21 464 484 464 487 0.96 15 16 3.4e-05 0.0021 18.6 1.7 1 23 493 515 493 515 0.98 16 16 0.00064 0.038 14.6 4.9 1 23 523 545 523 545 0.98
Sequence Information
- Coding Sequence
- ATGGATCCATTGGCTCTTGAAGCACCAACCACCGCTGAGATCAATACGTCCGAGCATGTCATTCCGGATGTCGCCTTGAATGCAGTGCGCATTAAATTGGAAATAAATTCTAAAGATAATCAAAATGAGACATATTTGCGCATTGAAGAGACTACTCGCGAAGAACAATGCTTGAACATAGCAATCGATCATCCACGACTGAAACGACGCAATGACCTGAAATGCGGAAACTTTACATGCTCCTTCTGCCCTCGAACCTTTGTAAAACTTAGCCTGCTAAAGGAACATTCCAAGATTATGCACACACGTCGACCTCTCTTTAAATGCGACATTTGTTCAAAAACATTTGTGCAACTTATCATGATCCGTCGTCACATGATTAATCACAGCGGTCTCAAGAAGTACAAATGCAGTATATGTAAAAAGCAACTAACATCTCTGTACTCATTCAAACGACACATGGACTTGCACACAATTGTCGACAAAGTCGAATGTCATGTGTGTCATGCCCAGTTTCAGGATCAACTTGCATACAAACGACATTTATTTGATCATGCTTCGAAAAAGACATTCGAATGTGATGTTTGCAAAAAAATGTTTACAGCAGCACATTTCCTGCGTTTGCATAAACTTATTCATTTGCCAGAGAAGAAGTTCAAATGTGATGTGTGTCCGAAGAGCTTTGCGCAAATGTCTACGTTACGAAGACACTCGTTTATACACAGCGACGAGAGTGAAAAGTCCTTTATATGCGACACCTGTGGAAAACGCTTTAATCTTGCGTATCTACTGAAAAATCATATGGTTGTGCACCAGAAATTGAAACCTTTCCAATGCGATGCATGCGAAAAGTCTTTTCTGTTACGTAGTTCTTTGGTAATACATCAAAATGCTGTGCACGCTGCTGAAAATCCGTACACGTGTAAGATATGCCAGAAAAGCTTTACTGAACCTTCATCACTGAAAAGACACATGACATTGCACGATGCGGTTAGCATATACACTTGCAAGAGCTGCGGCAAAATTTTCGACCAGGAACGATATCTAGTCAAGCATACAAATCTGATGCACTCTGAATCACCCGCACGCCCGTTTGCATGCCCACAGTGTGATATAAGATTTTCAAAACATGAGAAACTTGAAACGCACATGCTTAACCACGAGGATGTCAAGCAAGGTCTGATCAAGGAGTGTTATGTATGTGGTCGCTCTTTTAAGACAGTTTTCAATCTACGTCGGCATATTGAAACTTGTGCGAAATCACGAATTGGCGATGAATCTGCCCATGATCCTGCCGGAGAGGTACTAAAGTGTATATTTTGTTTAAAGGTGATGCTTaagaaatcgcagtttgaacgacacatgaagacgcaccttctcgaaaagacgttcaagtgtcattactgtggccagctgtttggttgtaaggaacaccttgcccaacatattcgctgttcgcacgatccggaaaaacccttcaagtgtgacatgtgtttgcgcacatttaccaatgaatccaaactttcgaaacatgttgacacacatacgcagacaatgatgaaatcgtacaaatgtgaacattgtAATTTACAGTTTTGCTATGCTGAAACACTTGAGAGGCATAATAATATGCACAAGATAGAATTGAACAGAACTGGACGTGTTTAA
- Protein Sequence
- MDPLALEAPTTAEINTSEHVIPDVALNAVRIKLEINSKDNQNETYLRIEETTREEQCLNIAIDHPRLKRRNDLKCGNFTCSFCPRTFVKLSLLKEHSKIMHTRRPLFKCDICSKTFVQLIMIRRHMINHSGLKKYKCSICKKQLTSLYSFKRHMDLHTIVDKVECHVCHAQFQDQLAYKRHLFDHASKKTFECDVCKKMFTAAHFLRLHKLIHLPEKKFKCDVCPKSFAQMSTLRRHSFIHSDESEKSFICDTCGKRFNLAYLLKNHMVVHQKLKPFQCDACEKSFLLRSSLVIHQNAVHAAENPYTCKICQKSFTEPSSLKRHMTLHDAVSIYTCKSCGKIFDQERYLVKHTNLMHSESPARPFACPQCDIRFSKHEKLETHMLNHEDVKQGLIKECYVCGRSFKTVFNLRRHIETCAKSRIGDESAHDPAGEVLKCIFCLKVMLKKSQFERHMKTHLLEKTFKCHYCGQLFGCKEHLAQHIRCSHDPEKPFKCDMCLRTFTNESKLSKHVDTHTQTMMKSYKCEHCNLQFCYAETLERHNNMHKIELNRTGRV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -