Basic Information

Insect: Bolitophila hybrida
Gene Symbol: -
Assembly: GCA_027564075.1
Location: JANSTU010050900.1:1-5958[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.2 1.3e+02 3.4 0.9 8 23 24 39 16 39 0.85

2 15 0.0003 0.018 15.6 1.4 1 23 47 70 47 70 0.94

3 15 0.00012 0.0071 16.9 0.5 1 21 76 96 76 97 0.94

4 15 0.00012 0.0071 16.9 0.8 3 23 108 128 107 128 0.95

5 15 1.9e-06 0.00011 22.5 0.8 1 23 134 156 134 156 0.99

6 15 3.7e-05 0.0022 18.5 0.7 1 23 162 184 162 184 0.99

7 15 5.9e-07 3.6e-05 24.1 4.3 1 23 190 212 190 212 0.99

8 15 1.5e-07 8.9e-06 26.0 2.3 1 23 218 240 218 240 0.98

9 15 1.3e-05 0.00076 19.9 0.5 1 23 246 268 246 268 0.98

10 15 0.00031 0.019 15.6 0.3 1 23 291 313 291 313 0.98

11 15 0.0089 0.54 11.0 0.8 1 23 394 416 394 416 0.97

12 15 0.00012 0.007 16.9 1.0 1 23 423 445 423 445 0.98

13 15 2.1e-05 0.0013 19.2 6.5 1 23 451 473 451 473 0.99

14 15 0.00088 0.053 14.1 4.8 1 23 479 503 479 503 0.98

15 15 0.01 0.62 10.8 0.2 1 16 509 524 509 524 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.2	1.3e+02	3.4	0.9	8	23	24	39	16	39	0.85
2	15	0.0003	0.018	15.6	1.4	1	23	47	70	47	70	0.94
3	15	0.00012	0.0071	16.9	0.5	1	21	76	96	76	97	0.94
4	15	0.00012	0.0071	16.9	0.8	3	23	108	128	107	128	0.95
5	15	1.9e-06	0.00011	22.5	0.8	1	23	134	156	134	156	0.99
6	15	3.7e-05	0.0022	18.5	0.7	1	23	162	184	162	184	0.99
7	15	5.9e-07	3.6e-05	24.1	4.3	1	23	190	212	190	212	0.99
8	15	1.5e-07	8.9e-06	26.0	2.3	1	23	218	240	218	240	0.98
9	15	1.3e-05	0.00076	19.9	0.5	1	23	246	268	246	268	0.98
10	15	0.00031	0.019	15.6	0.3	1	23	291	313	291	313	0.98
11	15	0.0089	0.54	11.0	0.8	1	23	394	416	394	416	0.97
12	15	0.00012	0.007	16.9	1.0	1	23	423	445	423	445	0.98
13	15	2.1e-05	0.0013	19.2	6.5	1	23	451	473	451	473	0.99
14	15	0.00088	0.053	14.1	4.8	1	23	479	503	479	503	0.98
15	15	0.01	0.62	10.8	0.2	1	16	509	524	509	524	0.94

Sequence Information

Coding Sequence: ATGATGGAAACATCAAATCGAACAGTCTATTCCCTGGCTACGCTTCTGAAATGCATCTGGTGTAATAAACAGAAATTCAACAACGAAAAAATGTATTTCAGTCATATGGATACTCATTTAACTGAAAATGCACCATTTTTCATATGCGAAATATGCAACAAGAAGTATCGACGCTTCGCCTCTTTGCAAATGCACTTCAGCAAAGTGCACTTGAGCATAACGCCTCACAAGTGTGAGTTGTGTTCAAAAGTGTTTGATGACTCCAATGGGTTGCAAAAACATCGAGCCACTAAACAGTGCAGCACCAGCAATATAAAAATATGTGAAACTTGTGGACGTACCTTTGCGACAGAGGCTAAACTTCGTCGACACTCTAAATTTCATGCAATCgaaaaaccatttaaatgtaaacaatgtagcaagcaatttattcagaaggcactactcgaggaacatattcgtgtacacacaaactacagaccctttaagtgtgcgctgtgcgataagggatttacaaagacgggttatgtgacggcacacatgaagtctcacacgaaacttaagccatacaagtgtcctatatgcgagaaatgcttttcccagtcaaatcaagttacaagacacaaacgaacacatacactcgagaaaccttatgaatgtgacgtgtgtcagaagtcgttctcacagtcggcccacctacggacgcaccagaagatacataccgccgagaaggcacacaaatgtgatgtttgcgagcagggattcacacagccggctggtctggaacgacatcgatccacgcatttggGAAGCAAAATGTCAATAAAAACACTGAAACCACAGAAACCTGTTGAGGAAAAGTCCATTCGATTCAAATGCGCTGTGTGTAATATGATTTTTGACAAAACCCAACTACTCATACGTCATGTTCGAATACATGATATATCCACAAACCTGGAGGCAGAAATTACATGCCCGTCACCACTGGCTGAATCGCCCATTCAGAACACTGAATTAAAACAGTCCATCGAAGAAAACCAAATAAAACAGCATTCACTGGTATCAAATGAGACATTTATAATTCAACATATTCCCGAGTACGACTATCAGTACGAAGAAGAAGTATTTCATGCAGAAGATGAAATATCATCAGTGCCTGTCGAACAGCCTTCTAAGAAATTTAACTGTACAGACTGTGAGGCATACTTTATTGATGAGGCCAAATACAAAAGTCATAAACGTCTTCATTCTAGCATTGAACAGCGTTTCGTGTGTCAACATTGTGGAAAAATCGTACTCACTATGTCCCAACTAACATCCCATATGCGAGTGCATAGCGATCAGCGTAATTTTCGCTGTGACATCTGCGGTTGCACATACAAGCACACGTCTCAACTGACCACTCACcttcgtaagcacacactggaaaagccttatcgatgttcacatgatggttgtgctaagacgtttgcgcagaactgtcagctacagaagcactttagggtacacagtggtgaaagaccgtacgtgtgttcgatatgcaaTCTATCGTTCTCGCGAGGATCGCATCTG
Protein Sequence: MMETSNRTVYSLATLLKCIWCNKQKFNNEKMYFSHMDTHLTENAPFFICEICNKKYRRFASLQMHFSKVHLSITPHKCELCSKVFDDSNGLQKHRATKQCSTSNIKICETCGRTFATEAKLRRHSKFHAIEKPFKCKQCSKQFIQKALLEEHIRVHTNYRPFKCALCDKGFTKTGYVTAHMKSHTKLKPYKCPICEKCFSQSNQVTRHKRTHTLEKPYECDVCQKSFSQSAHLRTHQKIHTAEKAHKCDVCEQGFTQPAGLERHRSTHLGSKMSIKTLKPQKPVEEKSIRFKCAVCNMIFDKTQLLIRHVRIHDISTNLEAEITCPSPLAESPIQNTELKQSIEENQIKQHSLVSNETFIIQHIPEYDYQYEEEVFHAEDEISSVPVEQPSKKFNCTDCEAYFIDEAKYKSHKRLHSSIEQRFVCQHCGKIVLTMSQLTSHMRVHSDQRNFRCDICGCTYKHTSQLTTHLRKHTLEKPYRCSHDGCAKTFAQNCQLQKHFRVHSGERPYVCSICNLSFSRGSHL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -