Bhyb014228.1
Basic Information
- Insect
- Bolitophila hybrida
- Gene Symbol
- ZNF236
- Assembly
- GCA_027564075.1
- Location
- JANSTU010006716.1:124-4397[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00026 0.016 15.8 4.0 2 23 105 126 104 126 0.97 2 19 0.00046 0.028 15.0 0.6 1 23 132 154 132 154 0.96 3 19 5.9e-06 0.00036 21.0 1.4 2 23 159 180 158 180 0.97 4 19 0.79 48 4.8 5.8 1 23 186 209 186 209 0.97 5 19 0.00087 0.053 14.1 5.6 1 23 234 256 234 256 0.98 6 19 0.0023 0.14 12.8 0.3 3 23 264 284 262 284 0.98 7 19 0.00084 0.051 14.2 5.0 1 23 290 313 290 313 0.96 8 19 0.53 32 5.4 3.8 1 23 321 344 321 344 0.95 9 19 1.1e-06 6.4e-05 23.3 0.9 2 23 411 432 410 432 0.97 10 19 0.0011 0.069 13.8 0.8 1 23 438 462 438 462 0.97 11 19 0.00055 0.034 14.8 1.6 1 23 494 516 494 516 0.98 12 19 9.2e-05 0.0056 17.2 3.0 1 23 555 577 555 578 0.96 13 19 0.00094 0.057 14.0 1.1 1 23 584 606 584 606 0.96 14 19 0.00016 0.0098 16.4 4.3 1 23 612 634 612 634 0.97 15 19 0.048 2.9 8.7 6.5 1 23 640 662 640 662 0.98 16 19 0.00044 0.027 15.1 1.3 2 23 1176 1197 1175 1197 0.97 17 19 0.00038 0.023 15.3 1.4 1 23 1203 1225 1203 1225 0.97 18 19 1.3e-05 0.00076 19.9 0.8 3 23 1234 1254 1232 1254 0.97 19 19 1.5e-06 8.9e-05 22.9 3.4 1 23 1260 1282 1260 1282 0.99
Sequence Information
- Coding Sequence
- ATGGACGACGTCAATTTCGCAGCCTCTTCAAATGAAGAACACCATTACATGGTCTTCCTCGACGAACAAAACAATCTTGCCGAAGAGCACATTCCATTCTCAGCCGCTTCTTCATCGGAATCTTATCCAAAAGCATTAAGTGACTTTAACGATGCGGAATTAACAGAAGATGACAAAATTTCCGCTGTATTTAGGCGAATGCATTATTATGTACCAAAACCGCCACCCAAGGTCAAGAAGAATATGAAGCCGAAACGCAAAAAATCCAAAAACATCTATCTAGCACCATCAGGAACCAGTTCAGCTATTTTAAAGTGTTCAACTTGTCCTCAAGCATTTACTAAACGTACTCATCTTAAGCGACACGAGAAATCGCATCTTTACGAGAAACCATACAAATGTGATTTGTGTACGGAATCCTTTAACAGCAGAGGAAACTTTACACTGCACTCAgccatacatgttacaccattacgctgtcctcaatgtggcaaagtgtttaatcgacatgcaagtttTCAAGGACATATAAAGACACACTTTGAAAGTGAGTATTTCTCTTGTAATCATTGCTCGGATCAATTTCACCATGAGAACGATTTAAACGATCACATGTCCAGCATGCATCCAAACAAAAAGTACAAGCGCAAAGCATGTACTGAAACAACTAATAAACCAACACGAAAAATCAAAGGTCCGTTCAATTGCAAATATTGCGATAAAATTTTCATAAAGAAATGTCTTTTTGAAAGACATGAAAGAAAACATCTAAACATTCGACCGTTCGGTTGTGACATTTGTCCTAAGAAATTCTTTCTAAAAGGTACGCTCGCAATTCATTTACAAAAGCACACTGGAATAAAAGAACACAAATGCTCATTTTGTGAACAGTCATTTACACAAAAAGGTAATCTTATGATTCATGTTTCCCGATGTCACAACCAACAAAGACAATCAAAATATACTTGTACCGCTTGTGCGTGTGTCTTTAAGAATCTGGGTGCACTGAATTCACACTTTAGCAAGTGTCACAGTTCATTGGTCACTGTCTCAGACCGTTCAGTTCCTGTTACAGAATCCGTACTGGAACAATTGGCACAGATTAAAAGGACAATAGTACGCTCAGATCTGCCAAGTCCAGATGGAAACAACATGATAGTACCAGAAGATAAAATTACTATTACACACCAGGAAATAAATGAGGTACAAATTAAAAAAGATCGTTTCCTCATGTGCACGTATTGCAGCAAGAAATATAAACGTCCGTCAGACTTGTTACGTCACATTAGGGTGCACACAAACGATAAACCGTACAAATGTCGAGAGCCTGATTGTGAGCGTGCATTCTGCATGAAGAGCAATATGATAATACATGAGCGCATTCATAGCAAAGCACGTGAAAAGCAAGAGGAGAAAGAACGACTTTTGAGTCTTAACTTTGATACAGTGCCGATGGAACCAGTATTGCCGAGCCAGTTGTTTACATGTGATGAATGTCCTAAAAAGTTGTGTTCTAACACTGCGCTCGTACGCCACAAGAATGTACATGCCAGTAAAACTCAAAAAGAAATGTCTTTGATTTCCATTAATATGGTTGAACCGGTGCGTCTGAATGAGGCCTCCGAGAAAAACAACACAGAAACAGATTTGGCCATTCGAAAGTTTGAATGTGAATTTTGCGGTGTCAAATTCAAACGTAAGGCTCATCTTAGCGATCACGTGAATATCCATCACAAAGGCGTAAAATTGCACAAATGCGAAATATGCGAAGAATCATTTGGCCAGAAAGCGGTTCTGAATCGACACAAATTGTACCACTCCAAATTGAAGCCACACTCGTGCTCAGTGTGTGATAAGAAATTTGCCACTACTTATCAGCTTAAGGTCCATCACCAGGTGCACAGTAATAAACGGAACTATATGTGTCCGTATTGTGAGAGAAAGTTTAAAAGTATGACCAGCTGCCGTGCACACATGAAACATCACCAGAGAGACTTGCAAAATAAGATCAACAAGCAACTTGCATCTGGTGAAATTGTCTTGAATTTCGAAAACTCGACATCGTTCGACAATCTTCAAGACCAAACTGTTGAATTAGTAGAAGAAAATTCTACTGCAACTTCTTTGCCGGGGCTTACTACGAACACAATTAGTAATAATAGTTCGTTTCTTATCTTGAATCAAGACATACCAGTACGTCCAACCGGTAAAGTCGAGTATTTCTTACTGTGCAAAAAAATTGATTTAAATGCTACACAAGTGGTTCACAATATTTCGGACAATATGCAAGAGAACAATATTTTACTGTCAGAAACTCAATTTTCAAATAATACAGAACATCAAGAAAATGATAATAATAATTCAAATGACCTCGATTTTACTCCAATTGATAAACTAGATCAAAATGAAGTATTGACTGAACATAACTACATGGAAGAAGTAGGTAATGACACAAACCTGCAAACCTATCAATTGATTAAAGAAATTAGTGAAATCGAGCCCGAATATGGATCAGCCAGTGATGCCGGTCAACAAGAACTGGAGGCTCACCTAAATGATCAGACATATAAATTAATTGAAGAACTTGGTTTGAAAATAGAAGATAACATACCGATTGAATACAAAGGAAACCTAAACCAAGAAAATATTCCTAAGGATAAGTCCACAAATCAACAAAACATTGTCTCTTTCGGTGTAATTAAAAATCAACAAATATATCAAACAAACGCACACGAGAAATTTGAAGATTTAAATCAACGAATTGCACGATTACCATCAGAAGGGTATGATAAACTTCAAGAAACATCTGGAATTTTAGAACTTGAGAAATTTGAGGATTTGTCTAAGAGAGTTTCTCGTTTCTCATCGTGCGACGAAAATACAATAGTGCCCGATCATAACGATCGTTTCGTCGAAGAGGTTGAGCATGAGAATTTCGAAAATCTAACACGCAGAATTGCACGTCTTCCTTCGTGTGATGATGTTTTCGTACCGGAAATCAGTAATACGCAAAATCATACTGACAATTATTTAATTGCACATGAAAATTTAAAAGAAATGGTCCGAAGAATGTCTCGTTTACCATCTGCAGATAGTGTTGGTATAGTTGATTGTACAGCTGAACAGGTAAACAACGAATATGTACTTgatattagcggtgaaaatgtgcaatttgaaataaactcgaataATAATCAACTAAACGATAATATAGAGATGATTAATGAAATGACTCTGCCTAAGGAAATGGTAACTTTGGATCAAAGTGCTCAGAAACTAGAAGCTCTGGCAACTTCATTTCCCCAAATTCAAAGTATTCTTGACATTACTAAACTACCAGAAATTACACCGAATCCATATTTGGGCAATGAGGATATGCCAAGAATTTCATTGGACCTACGATTCAGCAATGGCATCGATCCCAACATTCCCTTTGAAGCCATATACCGAGTAGACGCTGCTTCCACTGAAAACGATTTACCAAACCGAAAGTTTCGTAGCACAGTGTCTTCGAGGGCAAAACTAAAGTGTTACACCTGCAATCGCTTATTTACGAAACCGATTGATTTGACACGACACGAACGGACACACAGCGGTGCACGACCCTTCGCTTGTACCCAATGTCCCAAAGCATTTGCTCTACGTTGCACTTTGTCTAATCATATGTTGACTCATGATCCAATCAAGGGACGTATCGCGtgtcacgtatgcaacaagctgttttcaactcgtggcagtctaagtgtgcacatgcgaatccatacgcttgagagaccgttcaaatgtactgaatgccctaagaactttcgcactagcggacatctttcagcccacaaacgaacccatCGTaagcaggctgcagttaatgcatcagcaacagcagcaggttctcgcagTGCACGTTCGTATCAGACACAAAGGGATCGAAGTAATCTAATGGCTGTGGTCAACGTTGTGAATGAGGTTAACGCAAATCTGTGTACGGATAGTGAAGCAAGTTCATCGTTTATCAGCGAAACATCTAGGGCAGGAAGTGAAACACAGTGTACGGTAGTCAGTGACACACCTTCGGTGTTTTCATCATCGATATAA
- Protein Sequence
- MDDVNFAASSNEEHHYMVFLDEQNNLAEEHIPFSAASSSESYPKALSDFNDAELTEDDKISAVFRRMHYYVPKPPPKVKKNMKPKRKKSKNIYLAPSGTSSAILKCSTCPQAFTKRTHLKRHEKSHLYEKPYKCDLCTESFNSRGNFTLHSAIHVTPLRCPQCGKVFNRHASFQGHIKTHFESEYFSCNHCSDQFHHENDLNDHMSSMHPNKKYKRKACTETTNKPTRKIKGPFNCKYCDKIFIKKCLFERHERKHLNIRPFGCDICPKKFFLKGTLAIHLQKHTGIKEHKCSFCEQSFTQKGNLMIHVSRCHNQQRQSKYTCTACACVFKNLGALNSHFSKCHSSLVTVSDRSVPVTESVLEQLAQIKRTIVRSDLPSPDGNNMIVPEDKITITHQEINEVQIKKDRFLMCTYCSKKYKRPSDLLRHIRVHTNDKPYKCREPDCERAFCMKSNMIIHERIHSKAREKQEEKERLLSLNFDTVPMEPVLPSQLFTCDECPKKLCSNTALVRHKNVHASKTQKEMSLISINMVEPVRLNEASEKNNTETDLAIRKFECEFCGVKFKRKAHLSDHVNIHHKGVKLHKCEICEESFGQKAVLNRHKLYHSKLKPHSCSVCDKKFATTYQLKVHHQVHSNKRNYMCPYCERKFKSMTSCRAHMKHHQRDLQNKINKQLASGEIVLNFENSTSFDNLQDQTVELVEENSTATSLPGLTTNTISNNSSFLILNQDIPVRPTGKVEYFLLCKKIDLNATQVVHNISDNMQENNILLSETQFSNNTEHQENDNNNSNDLDFTPIDKLDQNEVLTEHNYMEEVGNDTNLQTYQLIKEISEIEPEYGSASDAGQQELEAHLNDQTYKLIEELGLKIEDNIPIEYKGNLNQENIPKDKSTNQQNIVSFGVIKNQQIYQTNAHEKFEDLNQRIARLPSEGYDKLQETSGILELEKFEDLSKRVSRFSSCDENTIVPDHNDRFVEEVEHENFENLTRRIARLPSCDDVFVPEISNTQNHTDNYLIAHENLKEMVRRMSRLPSADSVGIVDCTAEQVNNEYVLDISGENVQFEINSNNNQLNDNIEMINEMTLPKEMVTLDQSAQKLEALATSFPQIQSILDITKLPEITPNPYLGNEDMPRISLDLRFSNGIDPNIPFEAIYRVDAASTENDLPNRKFRSTVSSRAKLKCYTCNRLFTKPIDLTRHERTHSGARPFACTQCPKAFALRCTLSNHMLTHDPIKGRIACHVCNKLFSTRGSLSVHMRIHTLERPFKCTECPKNFRTSGHLSAHKRTHRKQAAVNASATAAGSRSARSYQTQRDRSNLMAVVNVVNEVNANLCTDSEASSSFISETSRAGSETQCTVVSDTPSVFSSSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -