Bhyb009380.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bolitophila hybrida
Gene Symbol
-
Assembly
GCA_027564075.1
Location
JANSTU010004677.1:3496-6211[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1.7e-06 0.0001 22.7 3.9 2 23 192 213 191 214 0.94
2 16 0.015 0.91 10.2 0.4 1 19 232 250 232 253 0.81
3 16 0.028 1.7 9.4 0.3 2 23 263 285 263 285 0.96
4 16 0.00042 0.025 15.1 2.8 1 23 291 313 291 313 0.97
5 16 4.6e-06 0.00028 21.3 1.0 1 23 319 342 319 342 0.97
6 16 0.069 4.2 8.2 4.2 1 23 347 369 347 369 0.98
7 16 0.00025 0.015 15.8 6.6 1 23 375 397 375 397 0.99
8 16 4.5e-05 0.0027 18.2 2.8 1 23 403 425 403 425 0.96
9 16 8.6e-06 0.00052 20.4 1.0 1 23 431 453 431 453 0.98
10 16 2.2e-08 1.3e-06 28.6 2.1 1 23 459 481 459 481 0.99
11 16 5.9e-05 0.0036 17.8 1.5 1 23 487 510 487 510 0.97
12 16 0.00019 0.011 16.2 0.9 1 20 533 552 533 555 0.93
13 16 1.2e-05 0.00074 20.0 1.4 1 23 561 584 561 584 0.95
14 16 3.5e-05 0.0021 18.5 0.7 1 23 590 612 590 612 0.98
15 16 6.9e-05 0.0042 17.6 2.4 1 23 618 640 618 640 0.98
16 16 0.01 0.63 10.8 1.2 1 23 646 668 646 668 0.98

Sequence Information

Coding Sequence
ATGGAGAGTTCTGCTCCAGTGGAGCCTGCAGCATACACACTAAACGGAACGTGTCGCTTGTGCTTGCGAAATGCCGAGTCCGATGAGCGAATGTACCCTGTATTTCAGCCGTGTGATAAGAATACTCGACTGGAGTTGAACAAGGACTTTAAATATCTTAAATTTGAAATCACAGAAGACGACGGTCTTCCGCAGCAGACATGCGAATCCTGCGTGAACACTCTGCTAAGCGTCAGTACGTTTCTCAAGAACTGTGAACGATCTCAACGTGTTTTAGAGGCTTTTTTTAATAGTAATTATTTGGAACCAAAGAATGAGACAGTAGCTACCTCGAATACAGGAAATTTCTCGGATTTTGAGTATTTGAATATTGACAACGAATTTGATGGAACAATTGAGATTGAAATCATTGACCAGGGTACTGTCAAGAGTGAATCTAAGGAGAAACTCCAAAATGTGTCTGCTGACGAACTAGGTAACCCGTATGCAGAATACGAGTCATTCGACAATAATGGTACAGATGATTGGGAAAATAATGATGTCCTGCAAGAAAATGGCGATGACATCGCCTTGGAATGTTTAATTTGCGAAAAAACTTACAAACGAAAAGCTCATCTTGAAAGACATATGCAAACGCACCATTCCGATAATCAAAAACCAACTGAAAAAGAAAGTAAAAAGCGTCAATATGATTTCATGTGCAACAAATGTGGAAAAAGATTTGTTAAACATGAAATTTTGGTAGACCACGAAAGATTAGGAGAATGTGCTATGTCTGTCAATCCAAAATGTAGATTTTGCAAGGAACTCTTCAATGACGCAGCTGAACTAGAGGAACACTTAACGAAATTGCATCCGCGTGACCGTCCTCATATGTGTCCAATCTGTAAGAAAACCTTTCAAAGCGTTTCGAATAGAAACACCCACCTCCAGTCACACAACAAAGATGATTCTTTTACATGTGGTACATGTGGACAAGGTTTCAAGAGCAAAGTCTACTTGAGCAAGCACATGAAGTCCGTACATACAGTTACGTATCATCAGTGTACTCAATGCTCTCTGAAATTCGAGAATACAGTAAAGTTTGAGTATCATCTCAAGTCTCATGATCCTAACAAGAAAtacaaatgcaaattttgcgataaatcgttcctacaacaacatcatctcgccaatcatgagcgcacacacactggtgctcgaccatacctctgcaatatttgcggcaaagATTTTAAGCAAGAGTGCAATTTCAAGCTACACCTTAAAATTCACACTGGACTAAGACCGTATATTTGCAATGTGTGCGGCAAAGATTTCATCCAACGTGGCTCATTTGCGATGCACATGCGACATCATTCGGGTGTGAGACCATACCAATGCGAACACTGTGGAAAAGATTTCGTTCAAAAATCATCGCTTACTGTTCACCTTcgaacacacaccggcgaaagaccttacaagtgtgaattgtgtgatcgtgccttcgtacaggctcagcagctcaaatatcaTCGTCACTCCGCGCATGGTGTACCAAACGGTGGCATCAAGAAAGAAATTACTAAACCCTCCTCAGATGGTCGCATGTACCCATACTGTTGTCCACTGTGCAATAAAGGATTCAAGCTTCCGTCCTCACTTTCTTCTCACATGCCTATTCACAACGAAGAGCGTAAACACGTTTGTACTCAATGTGGAAATTCATTTAAGCGAGCCGAACACCTTCGTATCCACATAAATGGAGTCCACCTTAAGCagaaaccgtacgcgtgtgacatgtgcaacaaaacgtttgcccagtccggtgatcggaatatccaccgacgccgacacacaggtgaaaaaccgcacaagtgtacaatatgtcaaaaaacctttcggcttcttaaggctatgcgagcgcatctacgcattcacaccggtgaaaaaccgtattcctgtgaattttgcAAAATGGACTTTATGACGTACACGGCGCTGGCTACGCATACCATGAAACACGAAACAGAATCTCGACAGGAAATTACTGCAAAAAATCAGCAACAAGTCGCGCAAATGCCCGATTCAGTAATAAACGAAACGCTGGCAATCATAACTCCAATTGACTCGAATCAGACTAAACTACAGGTTATGCCAGAACCCTTTACGAACTCAAGCACAACCTTGGGAACGATACATGAAATTTAG
Protein Sequence
MESSAPVEPAAYTLNGTCRLCLRNAESDERMYPVFQPCDKNTRLELNKDFKYLKFEITEDDGLPQQTCESCVNTLLSVSTFLKNCERSQRVLEAFFNSNYLEPKNETVATSNTGNFSDFEYLNIDNEFDGTIEIEIIDQGTVKSESKEKLQNVSADELGNPYAEYESFDNNGTDDWENNDVLQENGDDIALECLICEKTYKRKAHLERHMQTHHSDNQKPTEKESKKRQYDFMCNKCGKRFVKHEILVDHERLGECAMSVNPKCRFCKELFNDAAELEEHLTKLHPRDRPHMCPICKKTFQSVSNRNTHLQSHNKDDSFTCGTCGQGFKSKVYLSKHMKSVHTVTYHQCTQCSLKFENTVKFEYHLKSHDPNKKYKCKFCDKSFLQQHHLANHERTHTGARPYLCNICGKDFKQECNFKLHLKIHTGLRPYICNVCGKDFIQRGSFAMHMRHHSGVRPYQCEHCGKDFVQKSSLTVHLRTHTGERPYKCELCDRAFVQAQQLKYHRHSAHGVPNGGIKKEITKPSSDGRMYPYCCPLCNKGFKLPSSLSSHMPIHNEERKHVCTQCGNSFKRAEHLRIHINGVHLKQKPYACDMCNKTFAQSGDRNIHRRRHTGEKPHKCTICQKTFRLLKAMRAHLRIHTGEKPYSCEFCKMDFMTYTALATHTMKHETESRQEITAKNQQQVAQMPDSVINETLAIITPIDSNQTKLQVMPEPFTNSSTTLGTIHEI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-