Bhyb011486.1
Basic Information
- Insect
- Bolitophila hybrida
- Gene Symbol
- -
- Assembly
- GCA_027564075.1
- Location
- JANSTU010015225.1:578-3028[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 5.4e-05 0.0032 18.0 1.1 1 23 129 151 129 151 0.99 2 17 7.5e-06 0.00045 20.6 0.1 1 23 157 180 157 180 0.97 3 17 3.6e-05 0.0022 18.5 0.2 1 23 215 237 215 237 0.98 4 17 2.6e-06 0.00016 22.1 3.9 1 23 243 265 243 265 0.99 5 17 0.00091 0.055 14.1 2.3 1 23 271 294 271 294 0.97 6 17 0.012 0.73 10.5 3.8 1 23 362 385 362 385 0.92 7 17 0.25 15 6.4 0.1 2 23 417 439 416 439 0.94 8 17 0.0011 0.066 13.8 0.2 1 23 445 468 445 468 0.98 9 17 0.0011 0.065 13.9 7.6 1 23 473 495 473 495 0.98 10 17 0.00029 0.018 15.6 0.7 3 23 503 523 501 523 0.97 11 17 0.00045 0.028 15.0 7.1 1 23 529 551 529 551 0.98 12 17 6.2e-05 0.0037 17.8 2.8 1 19 557 575 557 579 0.94 13 17 5.3e-07 3.2e-05 24.3 4.6 1 23 585 607 585 607 0.99 14 17 0.0004 0.024 15.2 2.7 1 23 613 635 613 635 0.99 15 17 0.00015 0.0088 16.6 6.7 1 23 641 663 641 663 0.98 16 17 0.00021 0.013 16.1 3.2 1 23 669 691 669 691 0.96 17 17 1.1e-06 6.5e-05 23.3 1.3 1 23 697 719 697 719 0.99
Sequence Information
- Coding Sequence
- ATGGAATTCGAATTTGTCAGTGTCTCACCAGCCGATCATCCCAATACAAGAGAAAATACTATATTCGATGAAAACTGCACGGAAAGAAACGTATTAAAGAAATCTCGTAGAAAATGTGGTTCTATAAAAAAAGTTACACTGGAAATTGATAAAAAGTCCCAATCAAGCAAGAAAAACAAACGTAGAAAACCTGTCAAGGATCCCATTCTAGAGACAAGCTCAAAAACAATAAATTGTCCTGTATGTGATATAAATCTTGTCGAGATAGAGTATGCAGCACACTTGCTAAAACATCCTGATCAAAAAATTGCATGTGGCCTTTGTAAAAGCATTTTTCCGGATGTACCGACACTTTTCGCACATTCCTGTCAAGATGATGTGTTTTATCGGTGCAATGTCTGTCAATTATCTTGTTCAGATATTGAACTTCTTGAGCGACACGTTCGTACTCACTTTGATATTGGCTGGtacgcatgcacaatatgtggaaaaacatttatggaagccgttgatttggctaagcacctaaagacatcacatgaggactgtaaatatACCCTCAACTGTATTTTCTGTGAAAAAGTCCTGCACGATACAGAGGAATTTTTAAATCATGATCAACAACATCGTGGTCAGAAGCCATTTTATTGTACTGTCTGTGGTGAAGGATTTAGCACAGCTGAATTGCTCAAAGGCCACAAACGATTACACGTTTCAGATCGTCCTTATCAGTGTGCTAAATGTGATCAAAAATTTACGCGTTCCGAGGATTTGCATACGCACCAGCGAACGCACGATGGAAAATCCAACTTCAAGTGTCGCTTGTGTCATAAAATATTTTCAAACGGGAATCCTTTTGCACGGCACATGCGACAAGTACACAAAGATTTGTTCGCTTCAAACGAACTAAGTCTCATAGGATTCGTTATTGACGCCGAGATAAGTCGGGCGGCCGCAGACGGTAATCTAGGACAAACATTCGACTGGGACCTTGTTGCAATGATCCGAACATCAATTGATTCAGTAAAACCACTTCCTGATCTTGTGAAACCCACACCAATCGTCAGTGGACTAGTCCGTACATTTAAGTGTCCCTTATGTCAGCTGACCTTTGTCAAAAAGCGCAGTCTGGAATTGCACTGCAAACGAAATCACAGTGGAAATTATGACCCAGAACAGCTTCGCTCAATCTCTCCGATTGATCAACATTCAGATGCTTCCATTGCTGTGATAGTTCCTCGTAAGCAAACCTGTATGATATGCAGTGATATTTTTGATGACCGGCCACAACTTATTCAACATTTAATTTCATCTCACAACGGCGATAAACCCTACAAATGTGTCGTGTGTACACTTTCATTTGACCAGTCAATCCTCTTAGTAGAACACGTTAAAACTAGTCATCTCGTGACAAATCACAAGTGCCGATATTGTAAACTCTCCTATAAACAGGAGCACTCTCTTGTaaagcacatgaaaagacatgagggtgaaaatcttcttttctgttcagtgtgctcaataccgtactctactgataaacatcttgcctggcatatgcgtacacatgcagatgggaaacctcacaaatgtgacttctgcgagaagagtttttctcagtcctgtgataaaaacaaacatatgcgcatccataccaaggaacgaccgtacagctgtaccaagtgtgataaaacatttgcacatcggactagcctaaaaaagcatgatattgtgcatactggcataaaggcattccagtgcacggtatgcggaaaatcctttcaccacagcagcaaccttgtggtgcacacacgcacgcacaccggtgagagaccttacaaatgtgacgtatgcgaaaaaagtttctatgcatacggtcacttccaggatcataagcgtatccacacggggcagaaaaagtttcattgcaccgaatgcgataagcgatttatgcatcagagcagttggataaagcacaagcgaacccattctggtcttcgaccacacgcatgtgagttttgcgatagacgtttctcacagatcggtcatctgcaagagcacaaacgcattcacagcggtgagaagccattcaagtgtaccgtgtgccaacgagcttttcgtcgaacggatgctcttaaaagtcacatgaaaattcacgagcgtgagaCTGCCAAGTTACCAGCAGCTACTCTGGTTGCCCTAGAACCACCCACAGTGCCTACGTATGAATTTCAACTAGCACCGTTCCAGACAATTACGACATCCGGATCAAAACCAATTGGACAAACGGTGCAGACAGATTCACCACCAAAACTATTTGGAATTGAGGAAGCCGATAGATTGCCTCTTTCAGATAATATTATGAACGCATCTACTTCATCGTCAATTACCGTTCTGCGTTCGGTTAACGATACTGATTTTAATACATTTAGTTATAGTTTTCAGCTGTGA
- Protein Sequence
- MEFEFVSVSPADHPNTRENTIFDENCTERNVLKKSRRKCGSIKKVTLEIDKKSQSSKKNKRRKPVKDPILETSSKTINCPVCDINLVEIEYAAHLLKHPDQKIACGLCKSIFPDVPTLFAHSCQDDVFYRCNVCQLSCSDIELLERHVRTHFDIGWYACTICGKTFMEAVDLAKHLKTSHEDCKYTLNCIFCEKVLHDTEEFLNHDQQHRGQKPFYCTVCGEGFSTAELLKGHKRLHVSDRPYQCAKCDQKFTRSEDLHTHQRTHDGKSNFKCRLCHKIFSNGNPFARHMRQVHKDLFASNELSLIGFVIDAEISRAAADGNLGQTFDWDLVAMIRTSIDSVKPLPDLVKPTPIVSGLVRTFKCPLCQLTFVKKRSLELHCKRNHSGNYDPEQLRSISPIDQHSDASIAVIVPRKQTCMICSDIFDDRPQLIQHLISSHNGDKPYKCVVCTLSFDQSILLVEHVKTSHLVTNHKCRYCKLSYKQEHSLVKHMKRHEGENLLFCSVCSIPYSTDKHLAWHMRTHADGKPHKCDFCEKSFSQSCDKNKHMRIHTKERPYSCTKCDKTFAHRTSLKKHDIVHTGIKAFQCTVCGKSFHHSSNLVVHTRTHTGERPYKCDVCEKSFYAYGHFQDHKRIHTGQKKFHCTECDKRFMHQSSWIKHKRTHSGLRPHACEFCDRRFSQIGHLQEHKRIHSGEKPFKCTVCQRAFRRTDALKSHMKIHERETAKLPAATLVALEPPTVPTYEFQLAPFQTITTSGSKPIGQTVQTDSPPKLFGIEEADRLPLSDNIMNASTSSSITVLRSVNDTDFNTFSYSFQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -