Bhyb007423.1
Basic Information
- Insect
- Bolitophila hybrida
- Gene Symbol
- -
- Assembly
- GCA_027564075.1
- Location
- JANSTU010001352.1:4244-5866[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1e-06 6.2e-05 23.4 1.6 1 23 49 71 49 71 0.98 2 15 7.7e-05 0.0046 17.5 3.8 1 23 77 99 77 99 0.98 3 15 3.3e-07 2e-05 24.9 3.5 1 23 105 127 105 127 0.99 4 15 1.3e-05 0.00081 19.8 0.4 1 23 133 155 133 155 0.98 5 15 0.00084 0.051 14.2 0.6 1 23 161 184 161 184 0.96 6 15 0.032 1.9 9.2 3.1 1 23 199 221 199 221 0.98 7 15 5.8e-07 3.5e-05 24.1 0.7 1 23 227 249 227 249 0.99 8 15 0.00021 0.012 16.1 1.4 1 23 255 277 255 277 0.96 9 15 0.00015 0.0094 16.5 1.5 1 23 292 314 292 314 0.97 10 15 0.00023 0.014 16.0 0.3 2 23 329 351 328 351 0.89 11 15 0.00075 0.046 14.3 1.2 1 20 357 376 357 379 0.86 12 15 2.1e-05 0.0013 19.2 0.5 1 23 385 407 385 407 0.98 13 15 6.5e-06 0.0004 20.8 0.7 1 23 415 437 415 437 0.97 14 15 6.2e-05 0.0037 17.8 3.9 1 23 442 464 442 464 0.98 15 15 7.4e-05 0.0045 17.5 1.5 1 23 470 492 470 492 0.98
Sequence Information
- Coding Sequence
- ATGGAGGAAGAAGATGAAATATCAATTAAAGATGAGATTAAATCTGAGGAGGATTCCGAGCTTGAGTCGGAGTCTGAATACCGTGAAGACATTTTGGTCGAGGAAATTGATCATAGCTCATTTTTCAAACGATCTgagcaacaattcccatgcgatatatgccctaaaaagtataccaatcatctaggacttcaacgtcacatgcgcacacatctcggcgtaaaaccacacaagtgcaaagtgtgtgcaaaatcttttagcgaatttgaataccttaaagtccatcgtcggacgcacactggaagcaaaccatttcgatgttttgtgtgcgacaaatcttttacgcaagcaacctcattaatgcaccacatgaacacacattccggtaacaaaccgtacgaatgtgatgtctgcaaaaaaagcttcggtgccccatccagtctgcgatcacacaaacttacgcatttactcgagaaacgctacgaatgcgatatatgtagtttacgctgcacaactttggctaatatcaaaaaacataTTCTCTTGATACATGCCAAGACCATGCCAAAAGTTGTGCAAGCTCGAAAAAATGCATTCATGTGTGATTTGTGCCCTGCCACATTTAGCTATGCAAATagctacaagtgtcataagcgcacgcacacaaaagagaaaccttacaagtgtgacatatgtgataaaacatttgcggaactaagcaatcgaaaggtgcacatgaatacgcatacaaaagataagaaattttcgtgtACTCAATGTAGCAAAGTGTACATGTATGCATCATCGTTGAGCAAGCATATGTATGACCATCGTCTTGGAAAAGACGATTCTAAAACGGTAGCAGAAAAACAGTTTATGTGTCACATTTGCTCGAAAGTGTATAAGCTTAAAAACAAATTGGATGCACACATACGAGCACATGAATCAGACCCATTGAAAGTGTCCTTTCAGAATAAAATAATAAAATGTGATATTTGTGAGACTATTTTTACAACCTATTCGGAACTAATGAAACACTCAGTCTCAAGTCATGCAAgtgatcgaccattcaagtgtaacgtttgcggaaAAATGTTCAAAAGCCCCACTGTACGCGAACGTCATAATTTTTTGCATCGTGATCACAAACCGTTTACCTGTGAGATTTGCATGAAATCATTTATTAGGGAGGCCAGTCTTAAGTTGCACATGCTCAAGCATTCGGAGTCGAGCAATAAGAGATTTGTTTGTGATCAGTGCAACAAAGCATTTACAACCTCGCAGAGTCTTAGGGAACACAGTAATGTGCACACTGGAACATTCTACAACTGCGATACCTGTTCGAAGCGGTTTACGCGACTTCACAGCTTAAAGTTACACGTGCAAATGCATTTGGTGAGCAAACATTTTCAATGCAATCAGTGTAATACGTCTTTTGATTTAGCCGTGAAGTTGAGAAGACACCTTAAGCAGCACTCGGAGAATAAAAATAAAAGGGTTTAA
- Protein Sequence
- MEEEDEISIKDEIKSEEDSELESESEYREDILVEEIDHSSFFKRSEQQFPCDICPKKYTNHLGLQRHMRTHLGVKPHKCKVCAKSFSEFEYLKVHRRTHTGSKPFRCFVCDKSFTQATSLMHHMNTHSGNKPYECDVCKKSFGAPSSLRSHKLTHLLEKRYECDICSLRCTTLANIKKHILLIHAKTMPKVVQARKNAFMCDLCPATFSYANSYKCHKRTHTKEKPYKCDICDKTFAELSNRKVHMNTHTKDKKFSCTQCSKVYMYASSLSKHMYDHRLGKDDSKTVAEKQFMCHICSKVYKLKNKLDAHIRAHESDPLKVSFQNKIIKCDICETIFTTYSELMKHSVSSHASDRPFKCNVCGKMFKSPTVRERHNFLHRDHKPFTCEICMKSFIREASLKLHMLKHSESSNKRFVCDQCNKAFTTSQSLREHSNVHTGTFYNCDTCSKRFTRLHSLKLHVQMHLVSKHFQCNQCNTSFDLAVKLRRHLKQHSENKNKRV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -