Bhyb017653.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bolitophila hybrida
Gene Symbol
-
Assembly
GCA_027564075.1
Location
JANSTU010001638.1:11661-13214[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.19 12 6.8 0.5 1 23 39 62 39 62 0.96
2 12 9.1e-06 0.00055 20.4 0.6 1 23 187 209 187 209 0.99
3 12 7e-07 4.2e-05 23.9 1.7 1 23 215 237 215 237 0.99
4 12 1.1e-08 6.7e-07 29.5 1.5 1 23 243 265 243 265 0.99
5 12 5.1e-06 0.00031 21.2 0.7 1 23 271 293 271 293 0.99
6 12 2.7e-07 1.6e-05 25.2 3.4 1 23 299 321 299 321 0.98
7 12 6.6e-07 4e-05 24.0 0.2 1 23 327 349 327 349 0.98
8 12 2.2e-08 1.4e-06 28.6 0.3 1 23 355 377 355 377 0.99
9 12 5.8e-09 3.5e-07 30.4 0.8 1 23 383 405 383 405 0.99
10 12 7.5e-07 4.5e-05 23.8 4.8 1 23 411 433 411 433 0.98
11 12 0.017 1 10.1 1.3 2 23 441 463 440 463 0.92
12 12 0.00088 0.053 14.1 0.1 3 23 474 494 473 494 0.97

Sequence Information

Coding Sequence
ATGGACGTCCAAATATCGCCAAATTTCACAAATGAGAGCCAACGAAAGTTATTATCAGCTAACAAATCTCAATCAAAACAGTACAGTCGCAAACGACGACATTCCGAAAACCAGTACTGCTGTATGGTCTGTCCAGATGAATATGAAGACCCAAACGAACTGTACGAGCACTTGAAAAAGCAACATCCCAATCTTTTTGTTCATCCTACTGAAGCTAATTCTGACATTAGTGACGATGAATACGAGTACTCTCCAAGTCTGATGGAACCGATATGCGAACTTAGACACGAAGATGAAGCGAATGAGACGGTTGTAAATCCAGCTGAACGAAACAATCATTCTTTGTTAAAACATATAAAACAAGCTGGTGGTCGTACGTCCCTGTCCTCGGGTGAGGACGATGACGAAGAAATGTCATCTAGCTCAAGCGTACGCAGTGGTACTACATTAACAGCAGCTTTCCAAAATGCAGTTATTCCCCAAGGACCGGGTAGAGGCCGTCGGCGGGACATTGACAATGAGATGCTAGAGAACTTTCAACCAACTGGTGTATGCTTCTTTCAATGTACACAGTGCGAGAAATCCTATAATTTTGCTGGAGACCTGgcaaaacatgttcgttctcacaccgaaaacaagccgtaccagtgtagtatttgcgaaaagacattcacgcatatcggcagtttaaacacacatctccgcattcactctggtgtcaaaccgtacaaatgtaagatatgtacgaaggcattcactcaatccagttcactaatggtgcacatgcgatcccattccacggttaagccattccagtgtgaactatgcgaaaaaggttttatgagctcaaactcattgatttcgcatcagcgtacacacacagacggcgagaaattttcttgtacagagtgcgacaaatgttttaagcaagctattctcttaaaaaaacacatgCGTTTACACGAGGACTCGTTATGGTATCAATGCTCAATATGTCGCAAAGCATTCAAAcaggccggcgaactggttcaacatatgaaaggtcataccggtgaaaaaccattccagtgttctatttgtgagaaagcattcactcagccgggcagtttgaatacccacatgcgcatccataccggcgagaaaccgtttcagtgtaaagattgcgataagtctttcacacaggcctctagtttgtctgtacacatgaaagtacatattggtgagaagccctttcgatgtactgaatgccacaaatcgtatagtcaagagtcttatctaactaaacacatgcTGCGTCACAATATAAATTCAGAAAAACTAGTGTGCCAGCTATGCCAATTAGAATTCAAAACACCTCAGAAGCTACTTCATCATTTCGACAGAGAGCACGGCATTGATGTCGATCCACATACAGGTAGCTGTGGAAAATGTGACCTAAAGTTTAGCGGTGTCGAGGAGCTGATCGCACATTACAAAACTCATGATATTGAGTAA
Protein Sequence
MDVQISPNFTNESQRKLLSANKSQSKQYSRKRRHSENQYCCMVCPDEYEDPNELYEHLKKQHPNLFVHPTEANSDISDDEYEYSPSLMEPICELRHEDEANETVVNPAERNNHSLLKHIKQAGGRTSLSSGEDDDEEMSSSSSVRSGTTLTAAFQNAVIPQGPGRGRRRDIDNEMLENFQPTGVCFFQCTQCEKSYNFAGDLAKHVRSHTENKPYQCSICEKTFTHIGSLNTHLRIHSGVKPYKCKICTKAFTQSSSLMVHMRSHSTVKPFQCELCEKGFMSSNSLISHQRTHTDGEKFSCTECDKCFKQAILLKKHMRLHEDSLWYQCSICRKAFKQAGELVQHMKGHTGEKPFQCSICEKAFTQPGSLNTHMRIHTGEKPFQCKDCDKSFTQASSLSVHMKVHIGEKPFRCTECHKSYSQESYLTKHMLRHNINSEKLVCQLCQLEFKTPQKLLHHFDREHGIDVDPHTGSCGKCDLKFSGVEELIAHYKTHDIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-