Bhyb011310.1
Basic Information
- Insect
- Bolitophila hybrida
- Gene Symbol
- -
- Assembly
- GCA_027564075.1
- Location
- JANSTU010008953.1:3379-6522[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.00062 0.037 14.6 0.3 2 23 24 46 23 46 0.96 2 24 0.62 38 5.2 0.2 1 23 55 77 55 77 0.97 3 24 4.4 2.7e+02 2.5 0.5 3 23 98 120 96 120 0.71 4 24 0.0014 0.086 13.5 0.6 2 23 133 154 132 154 0.96 5 24 8.2e-06 0.0005 20.5 0.7 1 23 159 181 159 181 0.98 6 24 7.1e-06 0.00043 20.7 1.5 1 23 211 233 211 233 0.97 7 24 2.4e-05 0.0015 19.0 0.6 1 23 257 280 257 280 0.98 8 24 3.9e-07 2.4e-05 24.7 0.4 1 23 297 320 297 320 0.98 9 24 2.1e-06 0.00013 22.4 0.3 1 23 349 372 349 372 0.98 10 24 3.9e-07 2.4e-05 24.7 0.4 1 23 401 424 401 424 0.98 11 24 0.00056 0.034 14.8 2.9 1 23 443 466 443 466 0.93 12 24 0.00011 0.0065 17.0 3.2 2 23 488 510 487 510 0.96 13 24 8.1e-06 0.00049 20.5 1.1 1 23 545 568 545 568 0.97 14 24 7e-06 0.00042 20.7 0.9 1 23 586 609 586 609 0.97 15 24 0.0014 0.086 13.5 0.9 1 23 649 672 649 672 0.98 16 24 0.18 11 6.9 4.0 1 23 686 709 686 709 0.91 17 24 0.017 1 10.1 0.1 1 21 719 739 719 740 0.94 18 24 0.0021 0.13 12.9 1.3 1 23 768 790 768 790 0.96 19 24 8.4e-07 5.1e-05 23.6 0.3 1 23 811 833 811 833 0.98 20 24 4.1e-05 0.0025 18.3 3.4 1 23 855 877 855 877 0.98 21 24 0.0013 0.08 13.6 0.7 2 23 902 923 901 923 0.96 22 24 0.048 2.9 8.7 0.5 1 23 931 953 931 953 0.98 23 24 2.7e-05 0.0016 18.9 3.4 1 23 992 1014 992 1014 0.98 24 24 0.00022 0.013 16.0 0.2 1 23 1020 1043 1020 1043 0.94
Sequence Information
- Coding Sequence
- ATGGCACATCCAAGCAATAGCGTCGAAGTCAATATGGATGAACCGGAAGATTATGAAATTAAACCACTCAAATGCGATAAATGTGAAAATATATATTCCGATCAGACCGAACTTAATAATCATATGGAAAGCGATCACGGAGATCAAAAAAAGAGAGGAATGTATCGGTGTGATGTATGTTTTGTGCAAATGACTAGCGAAGAAACGTTGCTCGAGCACTTGGACACGCATATGGAAGTTGAGGCTGATCTGAGTAACAGTAACGATGCGATACGTCCAATTTTATTTGGGTGTCCATTTTGTAAAAAATCTTCTTCGGGTTCAGCAGAAGAGTTAAGACACCATATTGAACAGGAACATCCCGATAGAATCAATCAATTCATTCAAGATGAGCTTAACTGCACTTTGTGTGACAAAACCTATTTGCGAGCGGGCTATATGCAAAAACACATGCTTACGCACTATAAGCAGACTTTTGAGTGTACCGTATGCAATAAATCATACATTCGAAAAGTCTATTTGGATAAACACATGCTTATTCATACGGAGAATAATGGGACGGCAGAAAATGCGGATTCTATCAGCGATGAGGATCTTTCCGAAGAGTCGATCAAGAAAGAGAAAAAATCATTTAATTGTGACATCTGTCACAGATCCTATGTTCGGAATGGTGATCTTATGAATCATATGAAATTGCATGATAATTACGAACTTGAAACGGTTGAGTGTGATGTATCAATCATTGCACCGGCCGAAGGACCAAAAACGTACGAATGTGAATTTTGTGATAAAGTTTATATGCGCAATGGCTATCTCCagagtcacgtgaaaacagaacacttcgatgaaatgcagaatagccgtgcgccaccagatccaccgaaaccatataaatgtgacatttgcgataagtcttacattcgaaatggagatctcgttaatcacatgaaatctcaacataaTGATGCCGCCTTTAATCCTAATGGAGATATACAAATTGACGAAATTCAGAATAGTCGAGTACAGACAGATTCTTCGAAATTGTACAAATGCGACATTTGCGATAGGTCTTACATTCGGAATGGGGATCTTGTAAATCACATTAAGTCTCAACATTATGACACCGAATGTATTTCCAACGGTGATATAAAAATTGACGAAATTCAGAACAACCGTTTACAGACAGATGCTCCGAAATTGTACAAATGTGACATATGCGATAAATCATACATAAGAAATGGAGATCTCGTAAATCACATGAAATCTCAACATAATGACAATAAATTAAATAATGGTGATAATTCAAAGGCAACCACTGATCATCTGTTCAATTGTCTATATTGTGATAAATCCTACCATCGTCATGGAAATCTACAAACTCACCTAATAGCTGAACATTCCGATGAATTGGAAAAACGTCCGTCTCGAGATTTGCCTAGTGTTGAAGAACTGATACTGCTCGAATGTGAGTTTTGTGATAAGACCTATCATCGTCATGGAAATCTAGAGAGTCACATTCGAAAGGAGCATTCAGGAGAATTAGGAAATAATCGAAAATCAAAATTCGAACATGGTGATGAAACAGAGAATTGCTCTCGATCTGTGTCAAATACTGAAGATCAGCATGTCAGATTTGACTGTGAGTTTTGTGATAAATCTTATTATCGCAATGGTAATCTAGATTCGCACATGCGTAAGGAGCATTTAAATGAGTTGATAAATAATCGTTCAACAAGTGAAACATTACCTAAGCCGTACGCTTGTCCTCATTGTCCGAAGACATACTATCGCAATGGATATTTATTGATTCATTTAAAAACTGAACACAGTAATGAAACTAGCGATGCTAATGAATCCGAGCAAGAAGATGATGAAGATGAATTAGAATTGTCTACAAACGATAACAGCTGTGACGATAGTCAAATGCAACCTAACGAGAAACCATACAAATGCAATGTTTGTCTTAAAGGATATCATCGAGACGGAGATCTAAAGAATCATATACAATCGGCACACACTATCTCTATTGGTGACAGTATTGAGGACTCGAAGCGTTTTAAATGTAGGCTTTGCGAAAAATCCTATAATCACATGGGATTTTTGATAAATCATGTACACGATAAACATAACGAAAAATCAACACAGAAAATGACATATAATTGTGATTTGTGCGGTGGTGAATATGCTCGCCAAAGGGATCTAACCATACACAGAAGTAAGTGCATCACAGCTGGTTCGTCAAAGAATTCGAATACTGAAACAGATGCCGATGATCAAGATGTCAAACATAATCATGCGGCGTTCGAATGTAATCTATGCAGTCAAACGTTTCAGCACAATCGTGATCTATTAGATCATTTATTGGCGCATAAGAAAACTGCAAACAAAGAATCTGCTTTACTGAAATTAAAGTCTTCTGCTTTGAAAGATTTTGTATGTGAAATGTGCAAAAAATCATTTAATCGTCAAGATGAATTAGAAATTCATTTGCAAATTCACAAACATTTAAAAAAAGGCAATATTGAAACACGACGAAAGTCCAATGAGAACATGCAGAAAATCTACAAATGTAAACATTGTGCAAAAACTTTCTATCGCTTAGAGAGTCTTCGAATACATTTACTCAGTCACAATGAAAATGATAGACAGTACAGTTTAGATATCTCGATGAAACTAAAAAATATTACCGGAGACTGTACGCTGCAGTGTTACATTTGTAACGTAACATTTGAGTCGTTTTCTGTGTTGCGGAAACACCTTAAATTGCATCCTTTCTCTAAATTGAAACCGTACAAATGTTATGCATGCAACATATACTTTGAACGCTTTGACGAAATAGAGATCCACATAAAAAAGCACTTGGAAGGATGTACACTACCCGAACCTGATGTACAGTCTGACGATGATATTGCTATATCGAATCCATTGGCATTGACACAGAATACTCCAATTGtacataatgccagaaaaccctatgtctgtgtagtgtgtcataaatcgtttgcctttcaaaatcatcttcagatacactatcgtatacataccggagaaagaccgtacaagtgtgagttctgtgtgatgagctttgctcagccgggcaacttaaaggttcacgtttcgcagtcacacaaTCATAAGCAATGA
- Protein Sequence
- MAHPSNSVEVNMDEPEDYEIKPLKCDKCENIYSDQTELNNHMESDHGDQKKRGMYRCDVCFVQMTSEETLLEHLDTHMEVEADLSNSNDAIRPILFGCPFCKKSSSGSAEELRHHIEQEHPDRINQFIQDELNCTLCDKTYLRAGYMQKHMLTHYKQTFECTVCNKSYIRKVYLDKHMLIHTENNGTAENADSISDEDLSEESIKKEKKSFNCDICHRSYVRNGDLMNHMKLHDNYELETVECDVSIIAPAEGPKTYECEFCDKVYMRNGYLQSHVKTEHFDEMQNSRAPPDPPKPYKCDICDKSYIRNGDLVNHMKSQHNDAAFNPNGDIQIDEIQNSRVQTDSSKLYKCDICDRSYIRNGDLVNHIKSQHYDTECISNGDIKIDEIQNNRLQTDAPKLYKCDICDKSYIRNGDLVNHMKSQHNDNKLNNGDNSKATTDHLFNCLYCDKSYHRHGNLQTHLIAEHSDELEKRPSRDLPSVEELILLECEFCDKTYHRHGNLESHIRKEHSGELGNNRKSKFEHGDETENCSRSVSNTEDQHVRFDCEFCDKSYYRNGNLDSHMRKEHLNELINNRSTSETLPKPYACPHCPKTYYRNGYLLIHLKTEHSNETSDANESEQEDDEDELELSTNDNSCDDSQMQPNEKPYKCNVCLKGYHRDGDLKNHIQSAHTISIGDSIEDSKRFKCRLCEKSYNHMGFLINHVHDKHNEKSTQKMTYNCDLCGGEYARQRDLTIHRSKCITAGSSKNSNTETDADDQDVKHNHAAFECNLCSQTFQHNRDLLDHLLAHKKTANKESALLKLKSSALKDFVCEMCKKSFNRQDELEIHLQIHKHLKKGNIETRRKSNENMQKIYKCKHCAKTFYRLESLRIHLLSHNENDRQYSLDISMKLKNITGDCTLQCYICNVTFESFSVLRKHLKLHPFSKLKPYKCYACNIYFERFDEIEIHIKKHLEGCTLPEPDVQSDDDIAISNPLALTQNTPIVHNARKPYVCVVCHKSFAFQNHLQIHYRIHTGERPYKCEFCVMSFAQPGNLKVHVSQSHNHKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -