Basic Information

Insect: Bolitophila hybrida
Gene Symbol: -
Assembly: GCA_027564075.1
Location: JANSTU010048871.1:1-8571[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 3.5e-12 6.9e-09 35.4 0.0 1 39 332 371 332 375 0.90

2 4 9.8e-14 1.9e-10 40.4 0.1 1 39 386 424 386 427 0.94

3 4 1.2e-18 2.3e-15 56.1 0.0 1 45 441 486 441 486 0.97

4 4 4.8e-19 9.6e-16 57.4 0.0 1 44 493 537 493 537 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	3.5e-12	6.9e-09	35.4	0.0	1	39	332	371	332	375	0.90
2	4	9.8e-14	1.9e-10	40.4	0.1	1	39	386	424	386	427	0.94
3	4	1.2e-18	2.3e-15	56.1	0.0	1	45	441	486	441	486	0.97
4	4	4.8e-19	9.6e-16	57.4	0.0	1	44	493	537	493	537	0.96

Sequence Information

Coding Sequence: AGCCTTCTGATATCTGCCGAGCGTTTAAAAATTAAGGGACTCTGTGAGACCGCCGATCGAGCAGAACTCGCCGAAAGTACACCGCGGAAATACAAACGAAAACGTTCAATTTCATCGGTATCACAGCATTTTCTCGATCAGTCCTTAAGTGACATCGAGGAGTCTTCACCGCCAAAACAACAGCAACAGTTTGTGGTCGAAGATCAAGGTACCAACATAAATGAGACGCTTTCGGGCATCGGAGCACCTACCACAACAACCATTGTGATGGATGAGAGTATTGTTGAAAATGTGAATTCAAAGAATAACGTTACAATTCCGGTGCAGAACAATATGATGGGTGGCGTCTCGATGGGCTTCCTGGACTTTGCACCTGAACCCGCAGCACCTGCAGCCACTCCAGTCACAGAACACCTTGACCTGAATTGCACACCGAGTAATGATACAAGAGACTTATCAAATTCCGCATCAAATGGTGACATACGCATTAAATTCGAGACACTGCGTTCGATGGAACCGGAGGGAAATCTAGACATTGACTTTCATCAAATAACAAGTCCCAATCATAATCAACATCCCGTCGATGCTATTATTCTGAAGACACCGATCACacaagatcaacaaattcaaattgtccaacatcagcaacagcagcagcagcagcatatgcaaaatcagcaacaacaccagattcaacaactgcagcatattcagatccagcagcagcagcagcaccaacagatccatatgctagactctgaacaatcatcaatggaaaTGGAAATCGAATCGATAAAAACCGAGCAAGCCAATCATATGAACTCGTCCGAAAATGTATCCTTGCTAAATTCGTCCATCGTGGATATGTACAACAGTGAGTCCAGCGAAGATTCAAAAATGATGATAAATGGATCACCGACCGAAAGTAGTTCACCGCAGTATACGATTCTTGGTGCAACCGATTGCAAATCTCAAAGTGGACCAAAAACGTGGACACAGGAAGACATGGAACAGGCACTGGAGGCACTACGATCACATCATATGAGTTTAACTAAGGCATCGGTTACATTTGGTATACCATCGACAACACTCTGGCAACGTGCTCATCGTTTGGGCATAGATACACCGAAAAAGGAGGGGCCCACAAAATCGTGGAGTGAAGATTCACTGAACAATGCACTCGATGCACTGCGTACCGGTCAGATATCCGCTAATAAGGCTTCGAAGGCATATGGTATTCCATCGTCAACACTGTACAAAATTGCCCGACGCGAAGGTATACGATTGGCGGCACCGTTTAATGCAGCACCCACAACATGGTCACCTGATGATCTGGAACGAGCACTCGAAGCGATACGTACGGGAAATACATCAGTGCAAAAGGCGAGCACAGAGTTTGGCATTCCGACTGGTACGCTTTATGGTCGATGTAAACGCGAGGGCATCGAATTGTCACGTTCAAATCCAACGCCATGGTCCGAAGATGCCATGATGGAAGCACTGGAGTCAGTTAGAATAGGACAAATGTCTATTAATCAGGCAGCCATACATTATAATCTGCCATACAGCTCGCTATATGGACGCTTTAAGCGCGGCAAATATGATGTCAGTGGTCTGGAGACAATAAACACATCTCAGATTGATCAGAGTCCAGAGAATTCGGTAATTATTATTCGATGA
Protein Sequence: SLLISAERLKIKGLCETADRAELAESTPRKYKRKRSISSVSQHFLDQSLSDIEESSPPKQQQQFVVEDQGTNINETLSGIGAPTTTTIVMDESIVENVNSKNNVTIPVQNNMMGGVSMGFLDFAPEPAAPAATPVTEHLDLNCTPSNDTRDLSNSASNGDIRIKFETLRSMEPEGNLDIDFHQITSPNHNQHPVDAIILKTPITQDQQIQIVQHQQQQQQQHMQNQQQHQIQQLQHIQIQQQQQHQQIHMLDSEQSSMEMEIESIKTEQANHMNSSENVSLLNSSIVDMYNSESSEDSKMMINGSPTESSSPQYTILGATDCKSQSGPKTWTQEDMEQALEALRSHHMSLTKASVTFGIPSTTLWQRAHRLGIDTPKKEGPTKSWSEDSLNNALDALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWSPDDLERALEAIRTGNTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMMEALESVRIGQMSINQAAIHYNLPYSSLYGRFKRGKYDVSGLETINTSQIDQSPENSVIIIR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -