Bcin006768.1
Basic Information
- Insect
- Bolitophila cinerea
- Gene Symbol
- -
- Assembly
- GCA_010015015.1
- Location
- JAAAKO010007041.1:3850-6915[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 3.6 2.6e+02 2.8 0.2 3 23 69 91 67 91 0.82 2 15 0.55 39 5.3 1.3 5 23 104 123 97 123 0.82 3 15 0.51 36 5.4 2.5 2 20 133 151 132 153 0.77 4 15 0.89 63 4.7 0.2 3 23 196 217 195 217 0.92 5 15 0.00069 0.049 14.4 2.6 3 23 225 246 223 246 0.95 6 15 0.00015 0.011 16.5 1.3 1 23 277 300 277 300 0.97 7 15 0.0056 0.4 11.6 0.1 3 23 311 332 310 332 0.96 8 15 0.11 7.5 7.6 0.2 2 23 351 372 350 372 0.95 9 15 0.04 2.9 8.9 5.7 1 23 379 401 379 401 0.97 10 15 0.0027 0.19 12.6 3.5 1 23 412 437 412 437 0.95 11 15 0.00035 0.024 15.4 4.8 2 23 445 467 444 467 0.96 12 15 0.086 6 7.9 1.3 3 23 473 494 472 494 0.95 13 15 0.011 0.75 10.7 3.7 2 23 519 541 518 541 0.97 14 15 0.33 23 6.0 0.5 1 23 565 586 565 586 0.97 15 15 5e-05 0.0035 18.0 1.6 1 23 670 692 670 692 0.99
Sequence Information
- Coding Sequence
- ATGGCCACAGACGCCTACAAACGGTGGCTTATAGAGTCAGCAGAACTGGAGATATTGAGATCAATCCTAATGGAAAATGTTCCTGATGTCAATGTTGTAGAATCCCTACTCTGTCCAGTGGATGTGAACTCCTGCAACtcttacctaaaaaaaataatttccttgGATTTTGATGAAGAGTTTATCTTCCAGAAACCAATAGAATGTGCGatTTGCTCAGACTGTTCAATTTCGAATCTAAGGGAGTTGAAAGATCATATTATGGTGCAACATGAAAATAAAGACTCCATTTGTTGTGTGTCAACGAGAAACTGTGAGGAGacttttgataaatttgatacTTTGTGGAGGCATCAGTTTTTTGCTCATGGATTGACTAGACCGATGGTGTGGATAAGCTGCCCGACTTGCGATAAAACCTTCAAGTGTGTTATTGAATTTGGCAAGCACATGTGTATTACAGTAGATACTTCAAATCTGAcccttaaaaataatgattgtcAGTTTTGTAACCAGGATCTAATTACAAGAAAAAGGTACATGTTTCATCAGCAGTTCCATTTGGAAAAGGCTCGACCAAAACTATGCCTTATCTGCGAGCGTAATTTCCAGGATGAGAACGAATTCTATGAACACGTTAATTTTGCTCACTCAAAGCATTCAAATATATGCTGCTCCTTATGCGACGAAAGCTTTGTATCAAGAATAACATTCAGAAGACATCTTAAAAAATTGCACAGGACTGATTCGGAAAAAGACGTTGACAATTATGATGATTTTGGTGATTTTGGTCAACAAATTAGTATAGATATTGTAGAAAAAGTGTTTTACCAATGTGATAGTTGCCAGAAGAATTTCACGACAAAGAAACGATTATTGATTCACATCCAAAACGCACACATTAAACGAGAGTATAACGAACTTCCGATCTGTTCAGATTGTGGTATTGTGTTTAGAGACGTTGACTCAACATTTGAGCATATTCTAAAGACACATAATATCGAAATCAGTGACATTGTTTTCTGTTACCAACACTTCAATTCGGTACTAATCTGTGAGTTTTGCGAACTGGAATTTATTGATTCTGAGCGTTTGCTTCAACACAAACAGCTGCATATGGACGTTGATAAACCTTACACATGTTTACACTGTGACTACACATTTGATAAATTTAGCAAAATGAAGACACATAGTCTAAAACATCAGATTCCCAAGTTTCCAGTGTtacgtttgtatttttgtgatgTTGCAAATTGCGAAAAAACCTTTACAAATCACAACAATATGAAAATGCACAAGAAGACTTCACATCTAATTAATCCACAACTGATTAAGTGTCCCGATTGTGATCAGGTGTTCTGTCAGAGCTGGACGTTTACGCATCACCATCAGGTAATGCATCAGCCGCGAAAGATATGTTCGTTTTGTTTTAAACagattaaaacaacaataaatcttCGAAAACACTTGCAACTATTGCATCCTGAGGTCATGAAGAGCAACCGAACGGATGATGCGGACATCGAGGAAGTTCTGTCCTCGAAATGGCCAGTAACGTGCTTGCATTGTGATAGTACATTCgacgatttttataatttctgtgATCATTTGAAGACAGCTCATCGGGAATACAATACTGTCCAACTTTCGAAGTCAATTAAAATAGATTCGAATTCGGTTCCTGTAGCAAATTATTCGTGTCCTGTTTGCTTCGAAATAGTGGACAAGAAGTTaatgaaaaaacacaaattaatgCACAGGAAAAGGCGTACAAAGATTTCCGAATATGTTTTCCaacaatttatacatacaagCAATGACGGAACGTTATTTACATGTATACAATGTAATTATGTTTGCAATTTGCGACGTTACGCTCGCCGGCATCTGTTCAAATTTCACTTGGACAATGTGAACACCTTTTCTGAGAATTTGGTTGATAAAGTTAGTGAAATGCCAACATTTGCACGAAAAGTTTCTGCgaaatatgtaaaaaacttaaatccatACGTTTGTTTCTACTGCGATTTAAAATTCGGTACCAAAGTAAAACTTTCTCAGCACCTTCgGACTCATTTAACAACTTCAAAAGTTAAACTCGAGAAACCAATTAAAATTGAACCAGATGTCATTACACCACCTCTTAATCTCGTAAAGCCCTATCCTAAGCAAGTAATTGTACTACCTGGACCTGGAGAAAACTCAGTTCGGCCTGATGACGTTAACTTAGATACGAAGGATATTCTCCAGTATCCTagtgttatttattatactgttgaaaaatcaaaacaaatccaAAGAAACACGGAAGAGCAGGACGAGACGCTTTCTGCTTTGGACAATCTGGCCATTGCAGCCGCCATGAGTGAGAATGACAGAGAACTTGAGTCTGCGAAGATATTAAATATGCCGTTTCTACGAAGTTCAAAATAA
- Protein Sequence
- MATDAYKRWLIESAELEILRSILMENVPDVNVVESLLCPVDVNSCNSYLKKIISLDFDEEFIFQKPIECAICSDCSISNLRELKDHIMVQHENKDSICCVSTRNCEETFDKFDTLWRHQFFAHGLTRPMVWISCPTCDKTFKCVIEFGKHMCITVDTSNLTLKNNDCQFCNQDLITRKRYMFHQQFHLEKARPKLCLICERNFQDENEFYEHVNFAHSKHSNICCSLCDESFVSRITFRRHLKKLHRTDSEKDVDNYDDFGDFGQQISIDIVEKVFYQCDSCQKNFTTKKRLLIHIQNAHIKREYNELPICSDCGIVFRDVDSTFEHILKTHNIEISDIVFCYQHFNSVLICEFCELEFIDSERLLQHKQLHMDVDKPYTCLHCDYTFDKFSKMKTHSLKHQIPKFPVLRLYFCDVANCEKTFTNHNNMKMHKKTSHLINPQLIKCPDCDQVFCQSWTFTHHHQVMHQPRKICSFCFKQIKTTINLRKHLQLLHPEVMKSNRTDDADIEEVLSSKWPVTCLHCDSTFDDFYNFCDHLKTAHREYNTVQLSKSIKIDSNSVPVANYSCPVCFEIVDKKLMKKHKLMHRKRRTKISEYVFQQFIHTSNDGTLFTCIQCNYVCNLRRYARRHLFKFHLDNVNTFSENLVDKVSEMPTFARKVSAKYVKNLNPYVCFYCDLKFGTKVKLSQHLRTHLTTSKVKLEKPIKIEPDVITPPLNLVKPYPKQVIVLPGPGENSVRPDDVNLDTKDILQYPSVIYYTVEKSKQIQRNTEEQDETLSALDNLAIAAAMSENDRELESAKILNMPFLRSSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -