Bcin010974.1
Basic Information
- Insect
- Bolitophila cinerea
- Gene Symbol
- -
- Assembly
- GCA_010015015.1
- Location
- JAAAKO010007556.1:21546254-21548296[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2 1.4e+02 3.5 0.1 2 23 115 137 114 137 0.88 2 12 5.2e-05 0.0037 18.0 5.7 1 23 215 237 215 237 0.99 3 12 0.0012 0.082 13.7 7.4 1 23 303 325 303 325 0.99 4 12 0.0018 0.13 13.1 0.3 1 23 331 353 331 353 0.96 5 12 0.075 5.3 8.0 1.4 2 13 376 387 376 391 0.89 6 12 0.0016 0.11 13.3 0.6 1 21 430 450 430 453 0.89 7 12 0.72 51 5.0 1.3 2 23 489 511 489 511 0.91 8 12 0.26 18 6.3 3.2 1 23 519 541 519 541 0.97 9 12 3.4e-05 0.0024 18.5 0.4 3 23 550 570 550 570 0.98 10 12 0.001 0.074 13.9 2.3 2 23 576 597 575 597 0.97 11 12 0.23 16 6.5 2.5 1 23 604 627 604 627 0.93 12 12 0.0015 0.1 13.4 3.2 3 23 636 656 631 656 0.92
Sequence Information
- Coding Sequence
- ATGTCCACATTGCCGCTAATCTCCGTAGACTCGGATACAATCACGTTAAAATCTGGCCTGGTACTGAGAAGAATTAATAATTCTAACATATCTCGCCGCTTGGCGATGATTCGACGACCGATACCAGTGGTTGATAACGGACCGTCAGCAAATGTGGAAACAAAACCAAATCTTCCATATGAAGCACCCGAAACGATATCTACTGACCCTAATCAGTCCTTACATTTGCAAATCGAACAAGTCACAACTATTAAATCGGAAGAGCTAATTTGCAGTGACTATGAGGAATACGAAAACGAAGAAGTGTCGATGGGTTTTGAGAGCTATCCACTAACACTACTAAAGTGTCGCCTGTGTCCCGAAGAATTTGCCGAAGGAACGTTGCGCACAAAACACGAGCTAACGGCACACAGTGATCAGTCCACAAACAAGTACAAATGCACCGATGTCGAAGAAAATGAACACGAAGTAGTGTCAAACGGGATCGAGACATATCCTATTGAAATTCCAGATCAAATACCGACAAACATTAACGAAACATTAACACTACTAAAGTGTCGCCTGTGTCCTGAAGAATTTGCCGAAGGAACGTTGCGGTCCGATCACGAGCTAATGGCACACAGTGATCAGTCTACAAACACCTACAAATGCACCGAATGCGATTGTACGTTTAAGCATCCCATCAATCTAGCCAACCATCATATCACTCATACGGCTGTCGAAGAATACAAACACGAAGAAGTGTCAATGGGTATCGAGACATATCCGATTGAAATTCCTGATCAAATACCGACGAACATAAACAAAACCTTACTAAATGGTCGTCTGTGTCCCGAAGAATTAGCCGAAGGAACGTTGCGGACTGATCACGAGCTAACGACACAAAGTGATCAGTCTACAAACACCTACAAATGCACTGAATGCGATTGTATGTTTAAGCATACCAAAGATCTGGCCAACCATCACATTACTCATACGGGTGTCACACCATTCGTGTGCAGTATCTGTGGATTAACATTCACGACCGTACGCATCTTGAACTACCATTtagacacacacaaacgtacTCAAAAGCGAATCGAACGCGAGACCCTTGACAATGCAATAGCCGTACCCGAAATGCCGACATGCTGTGATTGTGGCAAATCCTTTAAAAACCTAGCCGGAATCTTCAAGAGAATTCTTAACTTAGTCAAAGACAAACTGTTGTGTCCTGATTGCGGTGAGAATCGTCGAGACTTTGAAGATTGTAAAATTCAAGCAACGGAAACAGACTCTGGCAACCAGTTCATGTGTGTGCTATGCAACAAAGGATTTCCGACGAGAGGCTCATTGCAGTCACACGGTTATTACAAACATGCGGACAACGCAAAAGCCAGAGAACGCGAACAGAAAAACGCCAGTAAAAACTTTAAGGCACACTGTAAGTATATGCACATAGAGATGGTAAAGCAATTCGTGCGCAAGTGCCACTTTTGTGAGGTTACATTCGATCGAGTCACCGATCGTGTGAAACACGAAAATGAAATTCACCGAGAACAGGACAGTGGTAAATTTAAGTGCGATCATTGCGAACGCCGATATTTGTTTATACGCAATCTGATCGATCATCGTAAACTGCATAATCCTGACAAAGGCCTAAAAGGATGTGACATTTGTGGCAAAAAGTTTGGGCAACTGGGTACGCTGAAGCTACACATGAAAGGGCACATAGATGGTGCACTACAGTGTTCTCTCTGTACCAAGTCATTTCATTTAGTTGCCAGTCTAAAGAAGCACATGGAACGCCACAACGAGAATCGTAAACGTTACGATTGTCCGAGCTGTACGTGTAGCTATGTGGAGTTTGCCGATCTGTGCCGACACCGGGCATACATACACGATGAGATCAAGTGTAAGTGGTTGTGCCTGGTGTGTGGCAAACGATTGTACGACAAGAAAGACTATCGCAAACACATGAAACAACACGCAAAGGCTGACAAGAGCTAA
- Protein Sequence
- MSTLPLISVDSDTITLKSGLVLRRINNSNISRRLAMIRRPIPVVDNGPSANVETKPNLPYEAPETISTDPNQSLHLQIEQVTTIKSEELICSDYEEYENEEVSMGFESYPLTLLKCRLCPEEFAEGTLRTKHELTAHSDQSTNKYKCTDVEENEHEVVSNGIETYPIEIPDQIPTNINETLTLLKCRLCPEEFAEGTLRSDHELMAHSDQSTNTYKCTECDCTFKHPINLANHHITHTAVEEYKHEEVSMGIETYPIEIPDQIPTNINKTLLNGRLCPEELAEGTLRTDHELTTQSDQSTNTYKCTECDCMFKHTKDLANHHITHTGVTPFVCSICGLTFTTVRILNYHLDTHKRTQKRIERETLDNAIAVPEMPTCCDCGKSFKNLAGIFKRILNLVKDKLLCPDCGENRRDFEDCKIQATETDSGNQFMCVLCNKGFPTRGSLQSHGYYKHADNAKAREREQKNASKNFKAHCKYMHIEMVKQFVRKCHFCEVTFDRVTDRVKHENEIHREQDSGKFKCDHCERRYLFIRNLIDHRKLHNPDKGLKGCDICGKKFGQLGTLKLHMKGHIDGALQCSLCTKSFHLVASLKKHMERHNENRKRYDCPSCTCSYVEFADLCRHRAYIHDEIKCKWLCLVCGKRLYDKKDYRKHMKQHAKADKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -