Basic Information

Insect: Bolitophila cinerea
Gene Symbol: -
Assembly: GCA_010015015.1
Location: JAAAKO010007556.1:15465595-15468979[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 1.4 96 4.1 0.4 3 23 65 86 64 86 0.94

2 18 0.0017 0.12 13.3 2.1 2 23 90 112 89 112 0.96

3 18 0.093 6.6 7.7 0.1 3 23 253 274 247 274 0.90

4 18 4.4 3.1e+02 2.5 0.7 3 23 286 304 284 304 0.77

5 18 0.065 4.6 8.2 5.2 2 20 481 499 480 501 0.93

6 18 1.9 1.3e+02 3.6 0.3 2 23 512 533 511 533 0.94

7 18 0.58 41 5.3 1.4 1 23 548 571 548 571 0.92

8 18 0.00058 0.041 14.7 0.4 3 23 582 603 581 603 0.97

9 18 0.00077 0.055 14.3 0.7 1 23 614 637 614 637 0.94

10 18 6.8 4.8e+02 1.9 2.6 1 23 683 706 683 706 0.89

11 18 0.00084 0.059 14.2 0.3 2 23 717 739 716 739 0.95

12 18 0.0022 0.16 12.9 3.0 1 23 745 767 745 767 0.98

13 18 0.017 1.2 10.1 0.2 2 23 773 794 772 794 0.96

14 18 1.2e-06 8.3e-05 23.2 1.5 2 23 800 821 799 821 0.98

15 18 0.00063 0.045 14.6 0.1 1 23 827 849 827 849 0.97

16 18 3.3e-05 0.0024 18.6 0.2 1 23 855 877 855 877 0.98

17 18 0.00012 0.0087 16.8 1.4 2 23 884 906 883 906 0.97

18 18 2.6e-05 0.0019 18.9 1.0 2 23 910 932 910 932 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	1.4	96	4.1	0.4	3	23	65	86	64	86	0.94
2	18	0.0017	0.12	13.3	2.1	2	23	90	112	89	112	0.96
3	18	0.093	6.6	7.7	0.1	3	23	253	274	247	274	0.90
4	18	4.4	3.1e+02	2.5	0.7	3	23	286	304	284	304	0.77
5	18	0.065	4.6	8.2	5.2	2	20	481	499	480	501	0.93
6	18	1.9	1.3e+02	3.6	0.3	2	23	512	533	511	533	0.94
7	18	0.58	41	5.3	1.4	1	23	548	571	548	571	0.92
8	18	0.00058	0.041	14.7	0.4	3	23	582	603	581	603	0.97
9	18	0.00077	0.055	14.3	0.7	1	23	614	637	614	637	0.94
10	18	6.8	4.8e+02	1.9	2.6	1	23	683	706	683	706	0.89
11	18	0.00084	0.059	14.2	0.3	2	23	717	739	716	739	0.95
12	18	0.0022	0.16	12.9	3.0	1	23	745	767	745	767	0.98
13	18	0.017	1.2	10.1	0.2	2	23	773	794	772	794	0.96
14	18	1.2e-06	8.3e-05	23.2	1.5	2	23	800	821	799	821	0.98
15	18	0.00063	0.045	14.6	0.1	1	23	827	849	827	849	0.97
16	18	3.3e-05	0.0024	18.6	0.2	1	23	855	877	855	877	0.98
17	18	0.00012	0.0087	16.8	1.4	2	23	884	906	883	906	0.97
18	18	2.6e-05	0.0019	18.9	1.0	2	23	910	932	910	932	0.97

Sequence Information

Coding Sequence: atgaaCCTCCCCAAGATCGACACCATCAATACGGAAACACTTGAAACCTCAGAAGCATTCCCTAGCACTGGCCTAGACATCCGAAAACTAAACATTGTCACGACGGTAGCGTGTGAAATCTGTCAAGAACTCTTCATCAATCCCTACAATAAGCTGGCACTGCACTATGTGTTCAATCACAATTTCGAATTTTGCGTCATGTGTGGCATGCTTTTTATCCACGCCGGCGACAGGGAACAGCATGAACGCGCCAAACACTTTTCCATAAAATGCACAGTGTGTTCGAAAACCTTTACGGAGCACAATTACTTCAAAGATCATATTGTCACAGAGCACGCAACTGCAAGGTGCTGTGCATTTTGCAACGTGTTGATTGAACCGGCTACAATGTTCCTGCAGCATTTGAAGAAAATCCATAGAGTACCGGAGGAAATGGCAGAATCTGTTTCTCTTTTGGACAAAATAACCTTTGATACTTGTTATAATAGTGGTAAAATGATTTGTGGCCTTTGCGGTAATATCAAACATCCTGTCGACTTATTTGCTCACTTTAAGAAACATCATTGCATTCCAATGGGAACGCTATTGAAATGTCTAAAGCAAAACTCTTTGACGAGTAATCAATTTCAAGTGCATGGTGCTACCTTAGaagtatattcaaatatatccAGTGATACGTGTGCAGTGTGCTACAGAAAATTCTGCGAAATTGCTGGTCGGGAAGCACATGAACTCTTTTGCCAAGGTGTAGTGCGATGCATAGAATGTGATGCATTTTTTTCGGACGCCCGGGATTTGGCAGTGCATGTGGAAAGTAATCATTTATCGGCGCAAGTTGATGACACGCAAAAGCAATGTGTTCTGTGCAAAGAAACCACTTCTAATCTTAACGAGCACCTTAGAGAAATGCATAAAGTTCAAGGTGAGGTGCTGGCGGCTCAAGCAGACGATCACTCGCCCTTGTTTTTGAATAGTACGACTAATTTAAAACAGTTTACCTGTATTTACTGTACCGCTGACGTAACAGATCTCATGCAAGACCTATCGAAGCTGCTGAATCATTACCGACAAGAGCATTGCGCCGATACGACACACATATATCGACGCTTAGGCAAAAATCCGTCGCTGCGTAAGTGCCAACCAAAACGCAAATCGGAAATGCTAAAGGAAACCACATTCGAAGAAGTGGCAGATCATTTTAATGTCGTTAGTACGATAACGGGGAATTCAATTCAGCAAACAAAGAGTGTATACGATTTCGAGGCAAATCTAGTGGAATGTATTGTTTCGACTGACGATGAAACGGCTTCAGAGGATGAGACAGAAAACGGAAATCGAAAGACTATTTTATGTCAATTTTGTCAGACCAAGGCACATTCTATGCAATCTCTTTTCACGCACATGCACAGGGCTCACGGGTTTGTGTGTTCGGTGTCCTGGCAATGCAGCAAATGTACCAGTCGATTCAAACGGAAGCAAAATctgaatatacataaatgtcaTAAGACTGAAAGTGATGATGCTGGTGTGCTACAGTGTCCTTTCTGCGAAGTGACTGCGACGAAAAGGCGTAAGATtagACTTCATATAGCGCAGCATGTGGATCAAATTGAAAGACGATGCACTAATTCCCGGATTGGCTACAAGTGTAAATTCTGTACAAAGTTCTATTGGACTGCTGGGCAGAAGAACGAGCACATTCTAAACATGCATAGCGCTATCGCCGAAAAGGTGCTCATACTTTGCAACGTATGTGCAGCATCATTTACCACAAAGACTAGTTTACGCTTACACATGTCTTCTGCTCATGCCACAGCACCGCAAATCGAAAAACTGATCTACAAGTGCACCATCTGCAAACTTTCGTACGCTAAACTGTCCGATTTGCGAGACCATTTCCTGAACGTACATCCTGCCCGAAAAACAATGTATTGTACCGAACGTAGGTGTCGCGTACGCATTACAGAAGATAAACTAAACCAGCATTACACGAAAAAGCACAAAAATGCAGCGATTGTATCgaaagataaaataaagaaaactttttacaattgcaaaaaCTGCAGCCATGTGTGCAAGAGTACAACCGCAGCACTAATACATTTCCAAATTGCGCACCGTCAGCTTCCTTATCGTGGTTTTAAATCGCCGTGTAAACTTTGCCCGATGGGCTTTCGCACCAAACGAGATTTGAGTTTGCACTACAAAATTGATCATCCGGACGGTAATCcgtttaaatgtgatttttgtgAATTGGAGTTTTCAAGCAAGAAGAAATTGTTTGCGCACAAACAGTATCACGTTACGGAAGGCAAGGTTTGTCCGGTTTGCAGCAAGAGTTTTTTGAGCTATGATTCGTACAGAGGCCACATTTTGATCCATGAAGCACCATCGCAAAAGTGTTCGTACTGTCCAAAGTATTTTGTGACACGCTCGAATCTAGTCCGGCACGAACGCACGCATACCGGCGTGAAACCCTTCAAGTGTCCGTACTGCGAAAAAACGTTTGCAGACGGTGGCGCAGCAAAAGTTCACGAAAAaagcCACACCCTCGAAGGAatttatatttgtgatatttgtgATGTGGTATTTAACACAAAGACTTCAATCCTGAGGCATTTGCGGGTTCATTTACgtgttaaaataacaaaatgccaagtgtgtaaaaagaaaataagaaatgCATACGAACTAAAGAGACACATCAAGTCGGAACACAAAGAGGAGCAGTGTTCGATGTGCAACCTGACGTATAGAGATCCGAAATTACTCAGAAAACACATGAACCGTATACATGTCACCGATAGATTTAAGATTCAGTGTCTACTGTGTGACTTTCAGTCTGAAAGTAAGAAAACTTATAAAATCCGGTTGCACTTTAAGACGGAGCACCCAGAAATTCAAAGACCATTAAAggctttctttaaaatatttgaacccAAAGAGGAGGTTCTAGTTTGCAACATCAAACAAGAGGATGAGATTCAAATAACAGATAGTGAGCCAGAATATAGCAATGATTAG
Protein Sequence: MNLPKIDTINTETLETSEAFPSTGLDIRKLNIVTTVACEICQELFINPYNKLALHYVFNHNFEFCVMCGMLFIHAGDREQHERAKHFSIKCTVCSKTFTEHNYFKDHIVTEHATARCCAFCNVLIEPATMFLQHLKKIHRVPEEMAESVSLLDKITFDTCYNSGKMICGLCGNIKHPVDLFAHFKKHHCIPMGTLLKCLKQNSLTSNQFQVHGATLEVYSNISSDTCAVCYRKFCEIAGREAHELFCQGVVRCIECDAFFSDARDLAVHVESNHLSAQVDDTQKQCVLCKETTSNLNEHLREMHKVQGEVLAAQADDHSPLFLNSTTNLKQFTCIYCTADVTDLMQDLSKLLNHYRQEHCADTTHIYRRLGKNPSLRKCQPKRKSEMLKETTFEEVADHFNVVSTITGNSIQQTKSVYDFEANLVECIVSTDDETASEDETENGNRKTILCQFCQTKAHSMQSLFTHMHRAHGFVCSVSWQCSKCTSRFKRKQNLNIHKCHKTESDDAGVLQCPFCEVTATKRRKIRLHIAQHVDQIERRCTNSRIGYKCKFCTKFYWTAGQKNEHILNMHSAIAEKVLILCNVCAASFTTKTSLRLHMSSAHATAPQIEKLIYKCTICKLSYAKLSDLRDHFLNVHPARKTMYCTERRCRVRITEDKLNQHYTKKHKNAAIVSKDKIKKTFYNCKNCSHVCKSTTAALIHFQIAHRQLPYRGFKSPCKLCPMGFRTKRDLSLHYKIDHPDGNPFKCDFCELEFSSKKKLFAHKQYHVTEGKVCPVCSKSFLSYDSYRGHILIHEAPSQKCSYCPKYFVTRSNLVRHERTHTGVKPFKCPYCEKTFADGGAAKVHEKSHTLEGIYICDICDVVFNTKTSILRHLRVHLRVKITKCQVCKKKIRNAYELKRHIKSEHKEEQCSMCNLTYRDPKLLRKHMNRIHVTDRFKIQCLLCDFQSESKKTYKIRLHFKTEHPEIQRPLKAFFKIFEPKEEVLVCNIKQEDEIQITDSEPEYSND

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -