Bcin011556.1
Basic Information
- Insect
- Bolitophila cinerea
- Gene Symbol
- -
- Assembly
- GCA_010015015.1
- Location
- JAAAKO010007556.1:32428847-32431847[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.097 6.8 7.7 1.6 2 21 247 266 246 267 0.94 2 15 8 5.7e+02 1.7 2.6 1 14 280 293 280 302 0.79 3 15 3.3 2.3e+02 2.9 0.3 2 23 310 332 309 332 0.87 4 15 1e-05 0.00072 20.2 1.8 1 23 338 360 338 360 0.95 5 15 0.00086 0.061 14.2 0.1 1 23 366 388 366 388 0.97 6 15 3.9e-05 0.0028 18.4 1.6 1 23 394 416 394 416 0.98 7 15 0.45 32 5.6 0.7 3 23 427 448 426 448 0.93 8 15 0.26 18 6.4 1.6 1 23 492 514 492 514 0.98 9 15 0.00015 0.011 16.5 0.6 1 23 527 552 527 552 0.95 10 15 0.0076 0.54 11.2 0.7 2 23 560 582 559 582 0.97 11 15 0.0082 0.58 11.1 3.1 2 23 587 609 586 609 0.95 12 15 1.7e-05 0.0012 19.5 0.6 1 23 681 703 681 703 0.98 13 15 0.0001 0.0072 17.1 5.6 1 23 709 731 709 731 0.98 14 15 1.1e-05 0.00077 20.1 3.0 1 23 737 759 737 759 0.99 15 15 0.5 35 5.5 0.6 1 23 765 790 765 790 0.83
Sequence Information
- Coding Sequence
- ATGTTACTCTTTGATTTCATTGGTAAAAAAGTGCACGAGAAACCAGATGACCAACAGGCAGTTTGCAGTAAATGCTTGGATCAGCTAAAGCAAAGCTATGAATTCAAACAGAGATGTTTACACCAAAATACAGATCAAAGTTCTGATTCTGACTCTGAAGAAGATTCAAAGCTAAGCGTTTTAGACACAGTGAAGAGGGAACAGGAAGAAAATACAGATGAAGTTATCAATAATCTAAATGATTGTATGAAATCAATAGATGAAAGCGATGAAATGGACACAGATGATactcagaaaaatatattaaatgtaaatgtagaTAACGTTACCACTGATGatgatttaataaacatattggAGGATGATTATATCATTGatacaaaatcaaaacacaAAGACAATACGGATGAGATTAGTATTGATCCAATGGAGTCCTGCGAGAGCATCGAGTATCTTGATGAAGCGAAACCGATCAACTTCGATGAGTACTTGCATTCGATAGCGTCTGTCGACTACAacgaaaaaatgaattttcccCAAAGGATAAATTGTCCAttGGATTATGAATGCATTAAAAATTTCACTGAACTAATGATTCATACGATCACGTATCATCAACACGACCAAACACTAGACTGCATATTGGGTGATAACTGTGGCCTGTTTGAAGATATTAATGAGCTTAAGAATCATCTTTTCCTGGAGCATTCGAAAAAAATACGTTCACAAATCCGATTGTCATGTCAGACGTGCGAGCACACATTTGATTCTGCCGTGCAGTTTGGTAAGCACATGTGTCTGATGGAGCAGCCACCCGAGGACATAGAAGACATGATCTACGAGTGCCAAACATGCAACAAACAATCTAGCTCCAGGAAAAGATATCTGTTTCACAAGCAATTTCATCTAAACAATGCACGCCCCAAAGTTTGTCTTGTTTGCCAACGAATATTTGAAGATGAGAATAGGTACTATGAGCATGTAATGTTTTCGCACGAAAAAGTGTTCGAGCACTTTTGCACTGATTGCGACAAAAGCTTCTCAATGGAATCGGAGCTCATACGTCACCGAAATGGTCATACGGCAGATAGAAATTTTATGTGCGGTGAATGTGGAAAAGCTTTTATGGACAAACAGACAGCCGATGAGCATATGAATGTGCATAGCTCTCAGCCAGAGTTTACGTGTGATATCTGCAATAAGTCATACGGACGCATTTCAAGACTCCGCAAACACATGTACAGTCACGAAATACTGCCACCTGCTTCAATGCCGCTGTGCGAGCAATGTAATCAAGTGTTCGAAAACGATAAAACTGCAATAAGACATTTCAAGCAACAGCACGACGAAGACGATGCTCTGCTGGAGTACAAAATAGTCGAACAGGTGTTTTGCTGTGAATTTTGTGAGGATGCATTCGAGACCGTACCCGCAGTGCTCCAGCACAAGGTCATCCATAACGGAGACAAACCATATCAGTGTAACTTCTGTGTCGTGCAGTACGATTCGTACGCTCGCctcaaaacacacaaaaatagtCATCAGAATATTCAAACAAAGTATCCAGTGCTGCGTCACTATGCATGTGATGTGGATAATTGCACGAAAACCTACCGGGATTGGTCTAGTCTGGTTTCACACAAGAAGACTCGTCATCTCATTAATCCATCAATAATAAAGTGTAAACAATGTGCTGCCACATTCTATAACAGCTGGAATTTTGCATATCACAAGAAAACCGCACACATGGAACCATTGAAGTGTCCGTTCTGTGAGCATACGTGTATCACGAATAAATCATTACAGATGCACATCGATCGAGTGCACATTTCGTCTGGTGCAAACAAATCAAACGGAACGAGAATAAATGAAGCTGCAACagatagaaaaaacaaaagtcaaaattCATTGTCCTTTGATTACGACAAGTATCTACGTATAGAGTCTGATGGATGGTACTGTATTGAGTGCGATAAACGATGCCTTTCTAAGAATAATGCAATGTCACACGTTAAAATGGTTCACTTGAAGGTGCTAAACTATTTTTGTGATGTTTGCGACAAGGGATTCTTTCAACGTGGTGACTTGAATGATCATGTACGAAAGCATACTTCCGAGACACCGTTTGAGTGTCATCACTGCGGACACAAGGTGCGAACCAAGTCTATGCTTCAGATGCACATTagAGCTCACACCAACGaaagaccttacaagtgtaaTTACTGTACGATGGCCTTCAAGCGATCATATGTTTTAAAGaatcacataaaaaaacataccggAGTCAAagaCTTTCCGTGTCCTGTAGAAAATTGCGAGAAGCAGTTCCGGACGTATTCTGCAGCCAAGTTCCATGCAAAAAAGAGCCACAATTCCGAAACGGGAGCCACTATTAAGCGAAAATCTCGAGCTCGCAAAAAAGATCTTCCTGCACAGAAAATTATCCCGAAACTGGTTGTTGTAATGCCTGGCCCATCATCCGATCAAGATATTAATAACGAGGACGGAAACATTCCTAGTCACGGTGACCACCGTCCGACTCTCGTCTACCGAATAGAACAACTCTCATCCACCGAATAG
- Protein Sequence
- MLLFDFIGKKVHEKPDDQQAVCSKCLDQLKQSYEFKQRCLHQNTDQSSDSDSEEDSKLSVLDTVKREQEENTDEVINNLNDCMKSIDESDEMDTDDTQKNILNVNVDNVTTDDDLINILEDDYIIDTKSKHKDNTDEISIDPMESCESIEYLDEAKPINFDEYLHSIASVDYNEKMNFPQRINCPLDYECIKNFTELMIHTITYHQHDQTLDCILGDNCGLFEDINELKNHLFLEHSKKIRSQIRLSCQTCEHTFDSAVQFGKHMCLMEQPPEDIEDMIYECQTCNKQSSSRKRYLFHKQFHLNNARPKVCLVCQRIFEDENRYYEHVMFSHEKVFEHFCTDCDKSFSMESELIRHRNGHTADRNFMCGECGKAFMDKQTADEHMNVHSSQPEFTCDICNKSYGRISRLRKHMYSHEILPPASMPLCEQCNQVFENDKTAIRHFKQQHDEDDALLEYKIVEQVFCCEFCEDAFETVPAVLQHKVIHNGDKPYQCNFCVVQYDSYARLKTHKNSHQNIQTKYPVLRHYACDVDNCTKTYRDWSSLVSHKKTRHLINPSIIKCKQCAATFYNSWNFAYHKKTAHMEPLKCPFCEHTCITNKSLQMHIDRVHISSGANKSNGTRINEAATDRKNKSQNSLSFDYDKYLRIESDGWYCIECDKRCLSKNNAMSHVKMVHLKVLNYFCDVCDKGFFQRGDLNDHVRKHTSETPFECHHCGHKVRTKSMLQMHIRAHTNERPYKCNYCTMAFKRSYVLKNHIKKHTGVKDFPCPVENCEKQFRTYSAAKFHAKKSHNSETGATIKRKSRARKKDLPAQKIIPKLVVVMPGPSSDQDINNEDGNIPSHGDHRPTLVYRIEQLSSTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -