Bcin003004.1
Basic Information
- Insect
- Bolitophila cinerea
- Gene Symbol
- -
- Assembly
- GCA_010015015.1
- Location
- JAAAKO010000756.1:22325433-22327209[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0011 0.078 13.8 1.6 2 23 194 215 193 215 0.96 2 9 1.9e-05 0.0014 19.3 0.7 2 23 222 244 221 244 0.91 3 9 0.0003 0.021 15.6 1.3 1 23 251 276 251 276 0.96 4 9 1.8e-05 0.0013 19.4 2.5 1 23 288 310 288 310 0.95 5 9 2.5e-05 0.0017 19.0 3.0 1 23 316 338 316 338 0.97 6 9 0.00082 0.058 14.2 0.3 1 23 344 366 344 366 0.96 7 9 0.00065 0.046 14.5 0.1 1 23 372 395 372 395 0.97 8 9 2.7e-05 0.0019 18.9 2.3 1 23 401 423 401 423 0.98 9 9 4.3e-06 0.00031 21.4 1.5 1 23 429 451 429 451 0.96
Sequence Information
- Coding Sequence
- ATGAACGCCATGGAAACAGGCCTCTTTCTCGTCGAAAATACATGTCGAGGCTGTATGAAAAACCAAGATAAAAGATCCATGGTGTTTATGTTAGAAGTAAATCAAAACATTGGAACGATCTTCTCGGAATGCACGTCTCTTGagcTGGATTTTGATGAAGGCCTACCACAATACATATGCAATTCATGTCACACTCAATTATTGAACTACACTCATTTTCGACAAGAATGTATAGATTCGGATAGGAAACTCCGGGAAAAgcTGTTAACACGCATTAAACAAGAAGTCAAGCcagatatttcagtttttccTATTGATAGTGCGAAAATACAACGATCCGATGAAATTGATCTACAGATAGTCCCGATAGACGACATTGCAACGAATGACATATTGTgTAAATCTGAGTACTCGGATGTTACACTCGAAAATAATGTTACACAAGATACCGCAAACTCCAGTGGTGATAGCTGTTCGGAAAACGATGCAAACGATCTCAACGATGACGATCCAATTTATGAATCTAACAACGCTTCAGAACCAGAAAATGATACATCTGAAAATAGTAAAACGTGCCTCGTATGTCCATTGTGCagtaaaaagtttataaaacaaCATCGTCTGGACGGTCACATGCGGCAGCACCAAGGACTCAAGCCATGCGTCTGTAACATTTGTGGAAAAGAGTTTTCAAAATGGTCAGGTCTTAGCTTGCACCTGAGTTTTGCTCACAAGGACGATAAGATTGAATTCCCGTGTAAAATTAACAATTGTAATAAAGTGTATAATCTCAAACAAACTTTAAAGTCTCACCAGCGCAGAGTGCATTCCGAGAGTCCAGCCGAACCACCCGAGAAAAAGTTTGTCTGCGATCAATGTGGCAAGATGTTCTCTTCGAATTGTGCCTTAAAAaaacatagTTATGTACATTCTGGCCAAATGCCTTTTGCCTGTAAACTGTGTCCAAAGAAGTACGCGACCAAGCATAAACTGAAAgagCATATGCTAAGACATGAAGGCATCAAGAATCATGTGTGCCCAATATGCGGTCTTAAAAAGACAACTCCAAACGAACTAAAGGTTCATATAAACTACCACACTCGGGAAAAATTGTTTCCATGCAAATTGTGCACGGCAGTGTTTACTAGcataggaaatatgtCTCGTCACGTTAAAATCGTACACTGCGGAATTAAACCGTACAATTGTACCATATGTAAGCGTTCGTTTGGAAAGGCCGAAACTCTAAAACATCACGTTATGACGCACACAGGAGAAAAGCCACACGCCTGTACCATATGTAACAAACGATTCATTCAAATGGTTGCCCTGCAAACGCATATGAAAACTCACAATAAgacttaa
- Protein Sequence
- MNAMETGLFLVENTCRGCMKNQDKRSMVFMLEVNQNIGTIFSECTSLELDFDEGLPQYICNSCHTQLLNYTHFRQECIDSDRKLREKLLTRIKQEVKPDISVFPIDSAKIQRSDEIDLQIVPIDDIATNDILCKSEYSDVTLENNVTQDTANSSGDSCSENDANDLNDDDPIYESNNASEPENDTSENSKTCLVCPLCSKKFIKQHRLDGHMRQHQGLKPCVCNICGKEFSKWSGLSLHLSFAHKDDKIEFPCKINNCNKVYNLKQTLKSHQRRVHSESPAEPPEKKFVCDQCGKMFSSNCALKKHSYVHSGQMPFACKLCPKKYATKHKLKEHMLRHEGIKNHVCPICGLKKTTPNELKVHINYHTREKLFPCKLCTAVFTSIGNMSRHVKIVHCGIKPYNCTICKRSFGKAETLKHHVMTHTGEKPHACTICNKRFIQMVALQTHMKTHNKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00211019;
- 90% Identity
- -
- 80% Identity
- -