Basic Information

Insect: Bolitophila cinerea
Gene Symbol: salm
Assembly: GCA_010015015.1
Location: JAAAKO010001801.1:1-8000[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.5e-05 0.001 19.7 0.9 1 23 312 334 312 334 0.98

2 9 7.3e-06 0.00052 20.7 2.2 1 23 340 362 340 362 0.98

3 9 0.25 18 6.4 2.1 2 23 509 530 509 530 0.97

4 9 1.7e-06 0.00012 22.6 0.6 1 23 536 558 536 558 0.94

5 9 0.00079 0.056 14.3 1.4 1 23 568 590 568 590 0.98

6 9 0.021 1.5 9.8 4.1 2 23 795 816 794 816 0.97

7 9 1.6e-06 0.00011 22.8 1.3 1 23 822 844 822 844 0.99

8 9 4.5e-06 0.00032 21.3 1.7 3 23 1027 1047 1025 1047 0.96

9 9 2.2e-07 1.6e-05 25.4 0.8 1 23 1053 1075 1053 1075 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.5e-05	0.001	19.7	0.9	1	23	312	334	312	334	0.98
2	9	7.3e-06	0.00052	20.7	2.2	1	23	340	362	340	362	0.98
3	9	0.25	18	6.4	2.1	2	23	509	530	509	530	0.97
4	9	1.7e-06	0.00012	22.6	0.6	1	23	536	558	536	558	0.94
5	9	0.00079	0.056	14.3	1.4	1	23	568	590	568	590	0.98
6	9	0.021	1.5	9.8	4.1	2	23	795	816	794	816	0.97
7	9	1.6e-06	0.00011	22.8	1.3	1	23	822	844	822	844	0.99
8	9	4.5e-06	0.00032	21.3	1.7	3	23	1027	1047	1025	1047	0.96
9	9	2.2e-07	1.6e-05	25.4	0.8	1	23	1053	1075	1053	1075	0.98

Sequence Information

Coding Sequence: GACAGCATTGGATCATGTTCCGAGGATGATGTTCAATTGCCAGACACAAACGAACTGAGCTGCCCAAACTATCCAGAGCCACATTTCGCAAATGGCGTTCGGTGTGACGACAAAGCTCTCCCGACTGTTGCTCCAAATCAAAATGGCACCAGAGATTCCCAAGCGTACGCAAACGCTGGTCCCTATGGCTTGCATCAATGCCAGGACAGTGCAAACAACAATACCGACGAACAGGTGGTGGCTCAAAAAGAATGCCTTGACGACACCTCGATGTATGCGCCACCGCGACATGTCACGCTGGAAGCTCTCGAGAATACTAAGGTTGCGGTGGCACAGTTTGCAGCCACTGCCCTGGCTAACGGTGCAGATGAGGCATCGCTAAAGGAACTGGCTCTGCTACAGTCTTCTCTGTCCACACTGCAGAGCCAACAGGTTATGCAGATTCAATTGATCGAACAGTTGCAGTCTCAACTAACAGAACGTCCAGCCACCAGTTTGGTTACCGAGGACGACGACGATGTCTGCAAGAAGGACATGGAAGTGGACACTGACAACGTTCAGGACGATGAGGATGTTCAATTGGAGTCCATTGCGTGCAACTATTCTAGGCCGATTGTTGGTTCTATCGAGGACAGCAGTCGTCCTCAGCTGGAGGAGTCAACATGTACAGCTGCGGACGAAATTCCAGCTCCGATGCGAGCTCCCATGTGTGAAATAAGTTCAGCACTTGCATCGACAATAATCACAGAGCACGATACACCATCTTCGATAGATGAACCGAACTCATTGGAAATGCTACAGCGAAGAGCCGAGGAAGTACTGGACTCAGCCTCACAGGGCATTCTCTCAAGCAATATGGTTGACGAGCTACAGTTCCGCAAGGACAAGCTAGCATCGATCGATGGAAAGGGACGCAATGACCCATTCTTCAAGCATCGCTGTCGATATTGTGGTAAAATATTTGGTTCGGATTCAGCTCTACAAATTCATATAAGATCCCATACTGGTGAGAGACCGTTCAAGTGTAACGTGTGCGACAGTCGGTTCACGACTAAAGGAAACCTTAAAGTACACTATCAACGGCACACGCATAATTTCCCGTACAACGGAGACATGGGGGATGATTTTCGATCTGATTCGGAGATGCAGCCAGACATGCGAGACTATCCGCCCTCGTCTGGCCTACCACCACCATCATTCTATGCTCAAAGAATACCACTGAGGTCTCCGGAGCCAATTTTAAGGAAAACATCGCCAGATCGCTCAGATTCGCATCGCCCGCCACCTAGGCAAGAAATGCCAGCAGATCTAAGCACAGATCATAAAATGCACCAGGCACATAATAAACGAGACATCATTGAAATTGATGATGAGCATAATCATAACGTAATTCGAGTACAAGAAAGTAGTACATTCGAGAATCAATTAAAAGGAGCGCATGAAGAGAGACATCAGTTTTCCGAAACGGGAGAACTTCAGAAGATGATAAACAACCTGGGAACACCGAACGCTAAGAATCCCAACGAATGTTTGATTTGCCATCAGGTGTTGTCTTGCAGCAGTGCCCTACAGATGCACTATCGTGTGCACACCGGTGAGCGTCCATTTACCTGTCGCATCTGCGGCCGATCATTCACCACCAAGGGTAATCTTAAGTCTCACGAAGGTGTACACAAAATCAGCTCACCCATGAGGTCATTGTATCAGTGTCCCGTGTGCCATGAAAGTCTATCGAATTTCTTTGTTTTGCAACAACACATGAAAGAGCATTCACTTGAGACCTCACGACCAGAACGTGAGTCTGACACTCGATTTAATTCGCATTCCATTAACGAAGTTTTAAGATCATCAGTCCAAACGACTAAGGCTTCAAATGTGTCACCGGTGTGTCAGGAGGACGTAAAGTCTGAGTCTTCGACTGGAGACTACAATGAGGAGGAATTCATGGAAGATGAAGCATTTAATAATGCTAAAATTATGGTTGAAGAAAGATTCGCAAGAAATGCATTAGCTCAACATCCACCAGCCACGTCCATTGCAGCATTGGAACAACAGGTGCGATCCATGAAAACCAATAGTATATCGTCGAATCAATTAAAGCACGCTGAACGAGAGAGTACACCCACGTTTCAAATGCAAGCCTCCGACTATTCCCAAGGAGCACTTGATCTCACACCGAAGCCGCCACAGTTTCCAAATCACAAGCCACCCGAGAGTTTAGGCTTGTACCAAGGATATCCATTCTATCCAAACGGTCCGAACTTCTCTTCAGCACCAACGATGACCAGTAACAGCAATCTCCCACTGAACTCAATGGCACATTCGAGTATGCCGGCCGGACCATTCAATCCTCTCGGACTAGCAGGTATTCGTGGCAATACAACGTGCaatatttgctttaaaacaTTTGCATGTCATTCAGCGCTGGAGATCCATTATCGCAGTCACACCAAGGAGCGTCCATTCAAGTGCACGGTCTGCGAACGCGGCTTCTCCACCAAGGGTAATATGAAGCAGCACATGCTGACGCACAAGATCAGAGATATGCCACAACATATGTTCGAGAACAAGACGCCGCGTTCCCCGTCCGCAGACAGCGAGCGATCCGGGGTGTCGAACAGTAGACCATTTCCGCAAGACGATCACAAGAGCATGGATGTGGGTACCGACCAAGCGAGTCCAACGGAATCAAGTGATATGGATGAAAGTCACGACGATCCCGAAGATTACACTATGCAAAATCCCAGTGGGCATTTACAGGAACGATACGAACGCGAATCTCCGGATGACCACGAGGAACCGGAAATTAAGAGACAATTCACAACTCCGTTGCTCTCACATAGTGTGGATCTGTCCCAACATCTGCGACACGAATACGAATATGAGGCACCCACGTATATGATGTCAGATGACAAGGAACCTGGTAATGGGTCAACGACGCCATCATCACCGAACGATTCGGATAACCCAAGTCATATGCAGAGCTTAAGTGAGCTTTGCAATGCAACCGCTGCTTCTTCACATAGCATGTCCTTGTCTAATACTAACAGTGATTCTGCCATTAATACTAAACACCTGTGCGGAGTGTGCCGGAAGAATTTCAGCTCAAGTTCTGCCCTGCAAATCCATATGCGCACTCACACCGGTGACAAGCCGTTCCGGTGTTCTGTGTGTCAGAAGGCTTTTACTACAAAAGGGAATCTTAAGgttcaTATGGGAACCCACATGTGGACGAGCGGAGCATCACGACGTGGACGTCGAATGTCTTTGGAGTTTCCTCTAAATCGACCGCTGCCAATCAATCAAAAGGATTCCGAGTTCTTGCAGCGACGTCCTGACATTTTCTATCCTTTTGTACCGGCGTTCATGAGCGGTGCAGCACATCCTAAGCTTCTGGCAGAGCTTAACGAACGCCAGTCGTACAACATGGCAAACGGTGGCGCCGGCGCCAGTGGACCAGGTCTACCAATGGGAATGCCACCGCTACAATTGGCCAGCATGGCAACGGCCTACAGTCAAGCGAACTTTGTGAACCGAACCCTTGGAACGCTCAACGGAGAACGGTTTCATCAGTCACAAGCCAGTCCAGCATTTAATTCAACCAAAGAGCAACTAACTAACAAACAACCACCTCACGAGAACAGTACGGCCCACCTAGTGCGAATGTGGGACATGGCACATCACGAGAAGAAACCCACGTCCAGATCAAGCCGGAAACGATCGGCCAAATCAACGATAAGCGAGGAGGCGGCAGCAGCAGCGGTTTCCGTGGAGGTGCTCCAAGTACCGACCCGCGGAGAAAGACTTGTAACTTGA
Protein Sequence: DSIGSCSEDDVQLPDTNELSCPNYPEPHFANGVRCDDKALPTVAPNQNGTRDSQAYANAGPYGLHQCQDSANNNTDEQVVAQKECLDDTSMYAPPRHVTLEALENTKVAVAQFAATALANGADEASLKELALLQSSLSTLQSQQVMQIQLIEQLQSQLTERPATSLVTEDDDDVCKKDMEVDTDNVQDDEDVQLESIACNYSRPIVGSIEDSSRPQLEESTCTAADEIPAPMRAPMCEISSALASTIITEHDTPSSIDEPNSLEMLQRRAEEVLDSASQGILSSNMVDELQFRKDKLASIDGKGRNDPFFKHRCRYCGKIFGSDSALQIHIRSHTGERPFKCNVCDSRFTTKGNLKVHYQRHTHNFPYNGDMGDDFRSDSEMQPDMRDYPPSSGLPPPSFYAQRIPLRSPEPILRKTSPDRSDSHRPPPRQEMPADLSTDHKMHQAHNKRDIIEIDDEHNHNVIRVQESSTFENQLKGAHEERHQFSETGELQKMINNLGTPNAKNPNECLICHQVLSCSSALQMHYRVHTGERPFTCRICGRSFTTKGNLKSHEGVHKISSPMRSLYQCPVCHESLSNFFVLQQHMKEHSLETSRPERESDTRFNSHSINEVLRSSVQTTKASNVSPVCQEDVKSESSTGDYNEEEFMEDEAFNNAKIMVEERFARNALAQHPPATSIAALEQQVRSMKTNSISSNQLKHAERESTPTFQMQASDYSQGALDLTPKPPQFPNHKPPESLGLYQGYPFYPNGPNFSSAPTMTSNSNLPLNSMAHSSMPAGPFNPLGLAGIRGNTTCNICFKTFACHSALEIHYRSHTKERPFKCTVCERGFSTKGNMKQHMLTHKIRDMPQHMFENKTPRSPSADSERSGVSNSRPFPQDDHKSMDVGTDQASPTESSDMDESHDDPEDYTMQNPSGHLQERYERESPDDHEEPEIKRQFTTPLLSHSVDLSQHLRHEYEYEAPTYMMSDDKEPGNGSTTPSSPNDSDNPSHMQSLSELCNATAASSHSMSLSNTNSDSAINTKHLCGVCRKNFSSSSALQIHMRTHTGDKPFRCSVCQKAFTTKGNLKVHMGTHMWTSGASRRGRRMSLEFPLNRPLPINQKDSEFLQRRPDIFYPFVPAFMSGAAHPKLLAELNERQSYNMANGGAGASGPGLPMGMPPLQLASMATAYSQANFVNRTLGTLNGERFHQSQASPAFNSTKEQLTNKQPPHENSTAHLVRMWDMAHHEKKPTSRSSRKRSAKSTISEEAAAAAVSVEVLQVPTRGERLVT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -