Bcin003227.1
Basic Information
- Insect
- Bolitophila cinerea
- Gene Symbol
- -
- Assembly
- GCA_010015015.1
- Location
- JAAAKO010000756.1:24986892-24989907[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 5.4 3.8e+02 2.2 0.5 1 23 33 56 33 56 0.88 2 17 0.049 3.5 8.6 2.7 1 23 175 197 175 197 0.95 3 17 0.007 0.5 11.3 1.2 2 20 204 222 204 223 0.95 4 17 0.52 37 5.4 0.1 2 13 239 250 238 256 0.78 5 17 0.012 0.88 10.5 0.9 1 23 269 293 269 293 0.98 6 17 1.3e-05 0.00093 19.9 2.6 1 23 299 321 299 321 0.97 7 17 0.00026 0.018 15.8 3.0 3 23 329 349 327 349 0.95 8 17 3.1e-05 0.0022 18.7 1.8 1 23 358 380 358 380 0.98 9 17 0.0022 0.16 12.9 0.1 1 23 386 408 386 408 0.98 10 17 1.3 91 4.2 0.2 1 12 414 425 414 434 0.83 11 17 0.0017 0.12 13.2 1.2 2 23 574 596 573 596 0.92 12 17 0.00086 0.061 14.1 1.4 1 23 622 645 622 645 0.94 13 17 0.0005 0.035 14.9 0.7 1 23 653 676 653 676 0.96 14 17 0.00036 0.025 15.4 5.3 1 23 692 714 692 714 0.98 15 17 0.00094 0.066 14.0 5.8 1 23 722 744 722 744 0.98 16 17 0.00054 0.038 14.8 1.7 1 23 750 772 750 772 0.98 17 17 0.19 14 6.8 0.1 1 23 778 801 778 801 0.90
Sequence Information
- Coding Sequence
- ATGAACCGCTGTGCGGATACGGTTAAACAGGAACAGCAACATCCCACTCGCAAGAAATGCGCAGAGGTGTTCAGAGACGTGCatggaaaattgatttttttgtgtttcctATGCTCGGAAGAGCTGGAGCACTCTACAGCATTTGAACAACATCTTGTGCAAGTGCATTTCcgtgcgagtgtgtgtgcgcCTGAAGAACGCCATCATCGCACCCGTGAGTCTGACGCGATAAAAGAGGAAATTGTCGACGTGAAGCCGGACCTGATTGAATTTATAGATGATGATGAATCTTCAGAACACAtagaaagtatatattataacgtAGATGATGAGGCTCCAGATTCACCGCAACCTAACGAAAAgttcaaaagaaaaactaaaatatctagCGAACCCGATGAAAACATAGAAAATCCCACAAGTAAACCGTTCAAATGTTCCAGTGCCAAATGTGAGCTAACCTTTGCCTGTCCCGGGCTACGGCTGCAACACGTCTCCGAAACTCATGGATTCAAGAATATTCATGTCTGCCAAATATGCTCATGTCAATTTGAGAATGAATTGGAATTGCAGAAGCACACGGAATTGCACAAGTACGTTGACCTGCCACGCTGTGAGTTCTGCAAGCAAATCTTCAAGTTCCAGTCAAACGTACAAAAACATCTATCACCCGATACACCACACCAAACCAAGAATCAGAAATCCGTACTGATTCCATGTCCGCGATGCAAACGATCGTTTGTGTCTCTTAGTCGTCACCTGAACAGCAATCAATGCAAGCCAAAAGAAACCGCTCAAATGTCGTTCGAATGTGATATCTGcaaaaacatactaaaatacAAGACCAAGAAGAATATAGAGCAACACATGCTAACGCACACGCCTGATCGTCCGTTTCAATGTAAGCTCTGCGGAAAATGTTTCCGATCCTCTGCGTACATTACGATTCACATGTCCTTGCACTCGAATATGCGGCCACATCTATGCACGATTTGCGGTATCTCGTACTCGATTAAGGGCAGTCTCACAAAACATATGCACAAGCACACGGAGGCGTATGCAGAGCGCCAGCATCGATGCCCAGTGTGCAATCGTGGTTTCACAACGCCAAACAAAGTGAAGCAGCACCTGCAGACGCACTCAAACGAAAGACCGTACCAATGTTCGGAGTGTCCGGCCGCATTTAAGCTCCAGAAAACCCTAGGCATTCATCGGAGTGTGCACAGCAACGCAAAGCCATTTCTGTGCAAGTATTGTGGCATGGGATTCGCCCAGGGAACCGGACGACGTGGGCATGAGAAACATTTAAACGCAAACGTTGATATTACACTCGACATTGAAGCAGTGCTGAAAAAATACTTTACGATCACAATCGAGTCTGGCCAGAGCATCTGTGGAGCGTGCTGGTCTTCTGTATCCACCTTTAACGAGTTTTACGATAGAATTGAAAGAGTGCGACACGCGTACAAATTCGAAGAGATATTCTTTGAGAATTCTTCTGTGAAAGGAGAGCCGAGCGACTGTTTTGAGTCTGCTAGAACAGTACAAGATGAATATCATCAGCATTCTGAATCAAATTTATCCGTCGCAAGATCCGCACAGCATAAGAACAAACGAATTGCAGACAGTTTCCAAGATTCGACCACAAATGGcgATGAAAAGGAACCACTACATAGAATACTTCACGAGGATGAGTTTCAAATAGATAATCGCGACCTAAAATGTAGTCTATGTGACCTAACGTTTAATAATCTAGACAAGCTCAAAGAACACTTCAAAGATCAACACAATCGATTTCAAAAAACACCACCAAAAAGGCGGAAAAAGTTGGATCCCATTGTTTATCACTCGGATTTTAAATCATACTCTTGTGACATCTGTTCCCTAAAAATTAAGAACCGACATAATCTATTGCGGCACATGGAAGCACGTCATTTTCCGAAAGAATTGAAACAATTCCCCTGTGATCAGTGCCCTAAACAGTTTCCGAAAGTTTTCCAACTCGAAAAGCATCGCAAGCAGGACCATAACATATTAATGAATACCGCCGCATTGCACATGAAAATTCGGCCCCATCAGTGCACTCTGTGTAAGGCCTCGTACTCGAGCAAAGGTTGTCTCACAAATCACATCCGAAAACATTTGAACGGGGATGATCTCCAGCACCGATGCCATGTTTGCAGCCGAAGTTTCAATACATGGAAAAAAGTTAGTCAACACCTGCAGACACACTCGAACGAGAGACCCTTCAAGTGTACGGAATGCCCGGCCAAATTTAAGCTCCGCAAAACCCTAAACACTCATCGCAGCGTGCATAGCAATGAGAAaccatttatttgtatgtactgTGGCATAGGGTTTTCTCAGGGTGCCGGACGACGTGGACACGAGAGACGTGTTCATGAGAATCGgttataa
- Protein Sequence
- MNRCADTVKQEQQHPTRKKCAEVFRDVHGKLIFLCFLCSEELEHSTAFEQHLVQVHFRASVCAPEERHHRTRESDAIKEEIVDVKPDLIEFIDDDESSEHIESIYYNVDDEAPDSPQPNEKFKRKTKISSEPDENIENPTSKPFKCSSAKCELTFACPGLRLQHVSETHGFKNIHVCQICSCQFENELELQKHTELHKYVDLPRCEFCKQIFKFQSNVQKHLSPDTPHQTKNQKSVLIPCPRCKRSFVSLSRHLNSNQCKPKETAQMSFECDICKNILKYKTKKNIEQHMLTHTPDRPFQCKLCGKCFRSSAYITIHMSLHSNMRPHLCTICGISYSIKGSLTKHMHKHTEAYAERQHRCPVCNRGFTTPNKVKQHLQTHSNERPYQCSECPAAFKLQKTLGIHRSVHSNAKPFLCKYCGMGFAQGTGRRGHEKHLNANVDITLDIEAVLKKYFTITIESGQSICGACWSSVSTFNEFYDRIERVRHAYKFEEIFFENSSVKGEPSDCFESARTVQDEYHQHSESNLSVARSAQHKNKRIADSFQDSTTNGDEKEPLHRILHEDEFQIDNRDLKCSLCDLTFNNLDKLKEHFKDQHNRFQKTPPKRRKKLDPIVYHSDFKSYSCDICSLKIKNRHNLLRHMEARHFPKELKQFPCDQCPKQFPKVFQLEKHRKQDHNILMNTAALHMKIRPHQCTLCKASYSSKGCLTNHIRKHLNGDDLQHRCHVCSRSFNTWKKVSQHLQTHSNERPFKCTECPAKFKLRKTLNTHRSVHSNEKPFICMYCGIGFSQGAGRRGHERRVHENRL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -