Bcin003775.1
Basic Information
- Insect
- Bolitophila cinerea
- Gene Symbol
- -
- Assembly
- GCA_010015015.1
- Location
- JAAAKO010000756.1:32040251-32044185[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.075 5.3 8.1 1.0 2 19 46 63 45 65 0.94 2 17 0.00057 0.041 14.7 1.5 1 23 83 105 83 105 0.97 3 17 0.082 5.8 7.9 0.4 1 23 111 134 111 134 0.91 4 17 0.058 4.1 8.4 0.2 1 23 137 160 137 160 0.96 5 17 0.0028 0.2 12.5 0.1 2 19 169 186 168 189 0.94 6 17 0.0002 0.014 16.1 0.6 1 23 197 219 197 219 0.98 7 17 0.0027 0.19 12.6 2.2 3 23 227 247 225 247 0.96 8 17 8.7e-05 0.0061 17.3 1.0 1 23 253 275 253 275 0.94 9 17 0.59 42 5.2 1.0 1 21 281 301 281 302 0.93 10 17 0.037 2.6 9.0 0.3 1 23 630 653 630 653 0.96 11 17 0.38 27 5.8 5.9 2 23 669 690 669 690 0.95 12 17 0.00022 0.016 16.0 2.6 2 23 726 748 725 748 0.95 13 17 0.0015 0.1 13.4 0.1 1 21 760 780 760 781 0.94 14 17 0.00035 0.025 15.4 1.8 1 23 789 811 789 811 0.97 15 17 5.8e-05 0.0041 17.8 2.1 3 23 819 839 817 839 0.96 16 17 0.00017 0.012 16.4 0.4 1 23 845 867 845 867 0.96 17 17 0.046 3.2 8.7 2.3 1 23 873 895 873 895 0.97
Sequence Information
- Coding Sequence
- ATGGAAGGACCAATGTTAGTGGATGAGAATCCAAACCAGGAGCTTCTGAACGATGATAGTTCATCGTCTGACGGATCAAAACATGCATCAGTCGAGACACTCCAACGCAAACGGATTAGAAAATGTGTTGAGAGCAAGTGCGAATTTTGTGAAAAACCATTCAAATCTGAGTCTAAAACATTCCGGCATGAAGGTAATTGCCCGCTGCGACCAAAAGAAGGCCGTGATGGTTCTTATCACGATAGATTTATGTgcaagATTTGCAAACAAGCTTTTAAGTTTGAAACAGGCCTCATTCGACATAAACTTAAACATTTGCCGCCTGGTGGTTTTCTGTGCCGCATTTGCGACATGACTTTTACCACGGAATTGGACCGATCTGCGCATAAGGAAACCGAACACAAGATATTCAAATGTCTAATCTGTGAAACAAGATTGGATTCTGAAGAACAGTACTTAAATCACATAAATTTATTGCATGAGGGACGCGATCGTGAGTATGTCGTTTGCTCAGACTGTGGTACACTGTTCCGATCACAAGGGCAGCTAAAACTTCACAATGATTCAAAATGTGGCACGATCAAGACGTTTTCCTGCAATCTGTGCGGTTCCAAGTACATGACACAGAACACACTTAACGCACACATGCAAATCCACTCGGGCGAAAAGAAGCACTTGTGTAACTATTGTGGAAACAGTTTTCTGAGCAAGGGCCAGTTGAAGGTGCATGAACGCAGGCACACCAAGGAGAAACCGTTCAAATGTGAAATAtgtaaaaaagctttttcatATCGAGAGAGCCTTGTCACACATTCCTCGTTGCACACAGGCATTAAACCGTATGCGTGTGAGAGCTGCGGAAATCGTTTTTCGTGCATTGGCAATCTTCTGAAACATCGTAAATCACGACCTGAGTCCTGCGGATTACCAGAGTTCAATAAGAACTCAAAAGTTGCTCCACGTGCCAGTGcaaagaaCAAGGGCAGCTTTACAATGGAAGAACCACAAAAATTGCCACGCACAAAACGCACAAAGAACGTTAAAGTATCGATTGTACCCGAAATGCCACCGATCTATGTACAACTGACGCCCGTCGTACCGGTAACTGTATTCCAAAATTCTGAGCCAAAGGTCGACTTCAGGATTGCGAACAGTTCAACAAGTAGTGTTAATAATAGTGCTTTGCAATACTATCAGGTATCGGAAGACTCTAAAATGGATATCATTTCTGAACATCAGTCAGTACCTGTGGATATACATTATACCGCTGAGGAaatgaataatatgaaaattgacTCTAACGTTGAAATCGAGTATGTGACATCCGATTTGTCTGTTCCATCAATGTTGTCAACTGTTGATGCACAATGTATTCAACAAGAGGTATCCAACAATGTGTATCCAACGGAAgtgtatcaaattaaatatgtcCACACTAATGATGGTGGACACACCGAGGTTGATGATTCCACTTGGGAGGAAGcgAATCACTATGCAACAGATGACATAATTCAAGAGGACAATGATGCGGACGCATTTAGTGAGCTTATCGAATATGATGAATCCGATGTGAAAAGCGAATCTGAACTCGTGGGCACAAACTTGATGATGACTACGGACTTTGGTGTAGAGCAAATTGTTGAGAATGTCGTAATGGATCAGGTGAACGAAGATAATCCAATGCTGCAAATTGAAGTTACAAACATTAAATTGGACTCTGAGCAATGTGTCCAATACACAAATGTAGAAAATGTTGAAATCAATCAAAGTCAAACCGAAGTATATTACACCAATACAGATACAGGAAAGTCCGAAGGAGATCTAATGCTAGCTGAGTTTCTGGTTGTTGAACCCGAACCAAATGTATCTGTTAACGTTGAGCCATTATTCCGATGTGTTCTCTGCCCAAGAGAGTACCGAAACGAGAAACCATACTTGAAACACTTGGCTAAAGTACACAATAGTGTTCCAGTGGAGATGAATACAAATCGCAAAAGTGGACCCACCTGTAAGGTGTGTCATCGCAACTATCACAACACAAAGATGTTGCGCAAACACGAGCTTTTGCATGGTGAAGATGGCTCACTCATTCACAAGTGCTCGTGTTGCCCATTCTATTTTGCATCTATGGAAGAAGTGGATGAGCATCAGAGAGAAATGCATCAGGACAAGCTGCATTGTCAGCGTTGCGATAAAACTTTTAAGGAGCCAGACAGTCTAAGTGCACATCTGAGACACGCGCACAGCAAAGAGCCACCACCACCGAAAAAGTACTTCTTCGTGTGTGCACGCTGTGGCACGAGTTTCTCGTCAAAGATTGCACTTTCGGACCATGAACGCTCCAATTGTGGTGTCTCGCCAATGTACAAATGTAATGTATGCGAGAAATCATACCATAGTGCTGGATCATTGAAAACACACTCCTCCGTACATACCGGTGAGATGCCACACCTATGTAATTTCTGTGGCAAAGCGTTCCGCACTCAGGGTCAGGTCAAAGTGCACGAGCGCAAACACAATGGCGAAAAACCGTTTGCGTGTGATtTCTGCCCAAAGACATTTGCCTATCGAGAGAGTCTGCTGACACATTTATCCCTACACACTGGTTTGAAGCGGTTCATGTGCCAAGCATGTGGCAATCGATTTTCGTGCATCTCTAATTTGCAGGCCCACCGAAAGTCACATCGACACACGTGCGGAAAATTACCGAAAATGACGAAAGCAGTCGGCCCCATGGGTCCGGAGAAAATAATAAGTACAACAACATTGAATGCTGATTCAACaaaataa
- Protein Sequence
- MEGPMLVDENPNQELLNDDSSSSDGSKHASVETLQRKRIRKCVESKCEFCEKPFKSESKTFRHEGNCPLRPKEGRDGSYHDRFMCKICKQAFKFETGLIRHKLKHLPPGGFLCRICDMTFTTELDRSAHKETEHKIFKCLICETRLDSEEQYLNHINLLHEGRDREYVVCSDCGTLFRSQGQLKLHNDSKCGTIKTFSCNLCGSKYMTQNTLNAHMQIHSGEKKHLCNYCGNSFLSKGQLKVHERRHTKEKPFKCEICKKAFSYRESLVTHSSLHTGIKPYACESCGNRFSCIGNLLKHRKSRPESCGLPEFNKNSKVAPRASAKNKGSFTMEEPQKLPRTKRTKNVKVSIVPEMPPIYVQLTPVVPVTVFQNSEPKVDFRIANSSTSSVNNSALQYYQVSEDSKMDIISEHQSVPVDIHYTAEEMNNMKIDSNVEIEYVTSDLSVPSMLSTVDAQCIQQEVSNNVYPTEVYQIKYVHTNDGGHTEVDDSTWEEANHYATDDIIQEDNDADAFSELIEYDESDVKSESELVGTNLMMTTDFGVEQIVENVVMDQVNEDNPMLQIEVTNIKLDSEQCVQYTNVENVEINQSQTEVYYTNTDTGKSEGDLMLAEFLVVEPEPNVSVNVEPLFRCVLCPREYRNEKPYLKHLAKVHNSVPVEMNTNRKSGPTCKVCHRNYHNTKMLRKHELLHGEDGSLIHKCSCCPFYFASMEEVDEHQREMHQDKLHCQRCDKTFKEPDSLSAHLRHAHSKEPPPPKKYFFVCARCGTSFSSKIALSDHERSNCGVSPMYKCNVCEKSYHSAGSLKTHSSVHTGEMPHLCNFCGKAFRTQGQVKVHERKHNGEKPFACDFCPKTFAYRESLLTHLSLHTGLKRFMCQACGNRFSCISNLQAHRKSHRHTCGKLPKMTKAVGPMGPEKIISTTTLNADSTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -