Bcin012062.1
Basic Information
- Insect
- Bolitophila cinerea
- Gene Symbol
- -
- Assembly
- GCA_010015015.1
- Location
- JAAAKO010007556.1:42005172-42007912[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.017 1.2 10.1 0.8 2 23 59 80 59 80 0.97 2 17 0.039 2.7 9.0 0.4 2 23 118 139 117 139 0.90 3 17 0.098 7 7.7 3.1 1 23 145 167 145 167 0.97 4 17 0.0056 0.39 11.6 2.7 3 23 235 255 234 255 0.97 5 17 6.6e-06 0.00046 20.8 0.8 2 23 292 313 281 313 0.97 6 17 6.5 4.6e+02 1.9 2.2 1 21 319 339 319 340 0.91 7 17 0.034 2.4 9.1 2.9 2 23 384 406 383 406 0.95 8 17 0.2 14 6.7 1.4 1 13 415 427 415 439 0.81 9 17 0.033 2.3 9.2 1.3 1 23 447 469 447 469 0.95 10 17 0.012 0.87 10.5 2.8 3 23 598 620 597 620 0.94 11 17 0.0014 0.098 13.5 2.6 1 23 666 688 666 688 0.97 12 17 4.4e-07 3.1e-05 24.5 2.0 1 23 726 748 726 748 0.98 13 17 1.6e-05 0.0011 19.6 0.3 1 23 754 776 754 776 0.99 14 17 1.6e-08 1.2e-06 29.0 2.0 1 23 782 804 782 804 0.99 15 17 0.00024 0.017 15.9 0.0 1 23 810 832 810 832 0.99 16 17 9.1e-06 0.00064 20.4 2.8 1 23 838 860 838 860 0.99 17 17 0.0035 0.25 12.2 1.3 1 23 867 890 867 890 0.96
Sequence Information
- Coding Sequence
- aTGGTCAATGGCAAGGATACCACAACGTCATCGACTGAACACCGCTGTGGAATCTGCCAAGCAATCCTCGATGATATCCTTCCAATagatttaaacaaatacaatgcAAAGCCTAAAGACACTATACAGAATACCTGTTCCCAAGAGATCGATGCAAATCCCGATGCACAGAATGTCTGTAAATTATGCTTTcgattatttgcaaatattgataCTCTTAGGAAGCACGAATCCACCCACTTCGAAGTGCACGAAGACGCTGAAAATGAGTTTGCCTGTTTAAAGTGTATGGAGAATTTGAATGACTGCTTGACCGAGCGTCCACAAATACATGGACTTGAAAAACAAATCCAGTGCAATTACTGTCCAAAAACATTCCTATCGGAGATGTGGTATCAGGAACACAGTCGAGATCATCTCGATCGTATCGTGCATCGGTGTAAACCATGCAAGCAATCGTTTATAGGTGAAAGCAGGTttattaaacacataaaaaagcataaaaacagTCCACAAgacaaaccaaataaaaatactgaattaAATGTGGAACATAAACATCAAAAAGACGACAAAACAGAAACGACCAGTATTaaatgtgtgttgtgtatgGTTCAACTGCAGGACATCACTGAAATTCGTAATGCTTTAGacgataattttgaaataaatcaaaCTCATGGGGATCTTCTAAACAACCCTTgtcaaatatgctttaaaaaattcATTTCTCAGGAGAAAATGCATAACCACCTGCAAAGCCATTTCGATTGCAATGGCAAAGTGTGCGGATTTGCATGTACACAGTGTACAATAGAATTAAAGAAACCATCCGTTTCCTGTGATACGAGCATCGTGAATCAATCATTGCTTATATGCAGCATATGTTCAAGAGGTTTCAAACAGAAATCGGAACTGATAAGACATCGAAGAGATCACTTCGATCGCGTTGTGTTTCAGTGTAAAAAATGTCTATCCTTTTGCGTGGGTCGCTCTGAATACAGAGCTCACAATAATACTATTTGTAAGAAATCAAAACGTACACATAACGTAAGGCCCTTCAAGTGTGCTCGTTCTAATGAAACTTTGCAAAATGAAACGAAAAACGATCAACATATGCTAGAATGCCAGGAAATAGTTTCTTTCTTGAAATGTTCAAAATGTCTGATTACATTTCCACACCAGGTGTCCTATACTGAGCACATAAACGAATGCCATGACCAAGACAATAATGGCAGACAGTACAAGTGTTCAGTGTGTGACATTAGTTTCGCCAGTAATTGTCGCTCTGAGTGGAGAATACATACGAAGAATCATTTTCGTATTTTAAGACCATTGTTTCTGTGTCACGTATGCGATGATCAGTTTTACAATGGCGATCTTTTGAGACAACACCTTCAATCGCATTTTAAGGACCAGTGCGCACAGACCACAAAAGACTCTTGTGATCAGAGCGTAAACAATGTTATCGACTTTAAATCAGTCGTAAACAGTGAATCGATTAAAGTAAACCAACTTTCAGAATTATTTACGGAAAATCTGCTTAATTTAGAACCCACTATAAACGATGAACTCGATAAccaggaaaataaaaattcctatAATTTAGATAACCAGTCCTCCAGCGAAAATGAGCCTGAAGCACATATAGACGACGAATTGGACGAGGTAATGCACCCAACGAACGTTAACAAATCTCCAGATCTATTGTGCGCAATTTGTACAAAGGTTGTAGATGACGTCTTCCGAACGGATGAGGAAATTACGAATGACTTGATCAAGAACAAATCGTGCAATTGCATTGTGTGCTATCGGTATTTCTCATCTCTTTCACAAGTTCGACGGCACGAGCGCACGCATTTTAGCGGTGGCGAAAAGAAGACCTGGATCGCTTGTCGCCAATGTGCCAACAACAATGCAACATTCTACGTGCCTTTCGACCAAGACGAAACCTTGAAGATATCCAGCCCAACGGTCACAAAGTCCATTGACAATTTTAACTGCTCCCTATGTCCAAAGaagtataaattacaaaattatttccgATTACATATGCGTGATCACATGGATAGGTCTGCTCACTTTTGTGGTATTTGTTCAAAAGCAATTGTCGGCCAGCGTCGCTATCGTTCGCACCTGTATCACCATCGAAATCCTCCGAAGCACAACGAAGTGTTTGAGTGCGCATATTGTGGTAAGAAATTCAACCGTAAGACTATGCTAACGACACACGTACGAACGCACGTCACCGAGAATCGCTACAAATGTCCGCAGTGCCCGGTGGTGCTGAAGACACGGGACTATCTGCGACAGCACATTCAGATGCATTCGGGCAAAAGAGACTACACCTGTGACTATTGTGGCAAATCGTTCTTTCGGAGTTCAGCGTTAACACGTCACCTGCGATCACACACCAAGGAAAAACCGTTTCAGTGCAGCGTGTGCGCAAAGGCATTTCCGTACGCTGAGGGTCTTGCTGTGCACACGCGTATACACACTGGGGAGCGTCCGTTTCAGTGTGATAAGTGCGAGAAAAATTATAAGGACTTCTCGGATTTGCGCCGACACAAACGCGTTCACGGTGGCATCGAGAAGAAGTTCCAGTGTGACTTGTGCGACATGAAGTTCTACGAGAATAAGTTTTTGCGAACGCATCGAGCGTCTGTGCATCGATCGGCACCGTTTTAG
- Protein Sequence
- MVNGKDTTTSSTEHRCGICQAILDDILPIDLNKYNAKPKDTIQNTCSQEIDANPDAQNVCKLCFRLFANIDTLRKHESTHFEVHEDAENEFACLKCMENLNDCLTERPQIHGLEKQIQCNYCPKTFLSEMWYQEHSRDHLDRIVHRCKPCKQSFIGESRFIKHIKKHKNSPQDKPNKNTELNVEHKHQKDDKTETTSIKCVLCMVQLQDITEIRNALDDNFEINQTHGDLLNNPCQICFKKFISQEKMHNHLQSHFDCNGKVCGFACTQCTIELKKPSVSCDTSIVNQSLLICSICSRGFKQKSELIRHRRDHFDRVVFQCKKCLSFCVGRSEYRAHNNTICKKSKRTHNVRPFKCARSNETLQNETKNDQHMLECQEIVSFLKCSKCLITFPHQVSYTEHINECHDQDNNGRQYKCSVCDISFASNCRSEWRIHTKNHFRILRPLFLCHVCDDQFYNGDLLRQHLQSHFKDQCAQTTKDSCDQSVNNVIDFKSVVNSESIKVNQLSELFTENLLNLEPTINDELDNQENKNSYNLDNQSSSENEPEAHIDDELDEVMHPTNVNKSPDLLCAICTKVVDDVFRTDEEITNDLIKNKSCNCIVCYRYFSSLSQVRRHERTHFSGGEKKTWIACRQCANNNATFYVPFDQDETLKISSPTVTKSIDNFNCSLCPKKYKLQNYFRLHMRDHMDRSAHFCGICSKAIVGQRRYRSHLYHHRNPPKHNEVFECAYCGKKFNRKTMLTTHVRTHVTENRYKCPQCPVVLKTRDYLRQHIQMHSGKRDYTCDYCGKSFFRSSALTRHLRSHTKEKPFQCSVCAKAFPYAEGLAVHTRIHTGERPFQCDKCEKNYKDFSDLRRHKRVHGGIEKKFQCDLCDMKFYENKFLRTHRASVHRSAPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -