Basic Information

Insect: Bolitophila cinerea
Gene Symbol: -
Assembly: GCA_010015015.1
Location: JAAAKO010000027.1:27907-29802[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.8e-06 0.0002 22.0 0.4 1 23 187 210 187 210 0.98

2 12 0.0005 0.035 14.9 3.8 1 23 244 266 244 266 0.95

3 12 0.00038 0.027 15.3 7.5 1 23 272 294 272 295 0.96

4 12 9.8e-06 0.00069 20.3 0.7 1 23 302 325 302 325 0.95

5 12 0.092 6.5 7.8 4.9 1 23 330 353 330 353 0.91

6 12 3.1e-08 2.2e-06 28.1 1.1 1 23 370 392 370 392 0.98

7 12 5e-06 0.00035 21.2 0.6 1 23 398 420 398 420 0.97

8 12 0.00033 0.023 15.5 0.3 1 23 429 452 429 452 0.96

9 12 0.00075 0.053 14.3 3.3 1 20 461 480 461 483 0.95

10 12 0.0055 0.39 11.6 0.7 5 21 493 509 489 511 0.85

11 12 5.1e-06 0.00036 21.2 2.3 2 23 518 539 517 539 0.96

12 12 0.37 26 5.9 0.8 1 21 545 565 545 566 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.8e-06	0.0002	22.0	0.4	1	23	187	210	187	210	0.98
2	12	0.0005	0.035	14.9	3.8	1	23	244	266	244	266	0.95
3	12	0.00038	0.027	15.3	7.5	1	23	272	294	272	295	0.96
4	12	9.8e-06	0.00069	20.3	0.7	1	23	302	325	302	325	0.95
5	12	0.092	6.5	7.8	4.9	1	23	330	353	330	353	0.91
6	12	3.1e-08	2.2e-06	28.1	1.1	1	23	370	392	370	392	0.98
7	12	5e-06	0.00035	21.2	0.6	1	23	398	420	398	420	0.97
8	12	0.00033	0.023	15.5	0.3	1	23	429	452	429	452	0.96
9	12	0.00075	0.053	14.3	3.3	1	20	461	480	461	483	0.95
10	12	0.0055	0.39	11.6	0.7	5	21	493	509	489	511	0.85
11	12	5.1e-06	0.00036	21.2	2.3	2	23	518	539	517	539	0.96
12	12	0.37	26	5.9	0.8	1	21	545	565	545	566	0.93

Sequence Information

Coding Sequence: ATGACTAACACCAAAGAAGATGTCCGAATTCAGTCATCTTCCATCGTTACTAAGCCGCCAGATGAAGAAAACACGGAAGAAGTCAGAATACAGCTTAGGTCAAGCTGTCGCCTGTGCCTTAAACCGCGCCAAAACGTGAATCTATTCAGTGAACTGGAAGACAGTCTGAAATACTCTGAAATTGCTATGCTTTTAGTCAGTATAGTGattgatgaaaatgacGATCTACCTCAGTCCATTTGCAATGGATGCAGTAGTAAACTTACATTCTTTCTTGAATTCCAAAGGGTCTGCGTTGCATCCGAAGTGCGATTGTCAAGTGTATTTTCGAGAAACGTTCAGAAGGCGGAGACCACCTGCGAAGAAGAGATGATCGGAGAAGATGACAGCAGTTGGCCAGAAGCATACGTGGTTCAGAAATCGGAACTTACCAGCGAAGAAGAGGAAATGATCGAGGAAATAGCCAGCAGTTTGGCAGAATCAGACATTGAACAAGAATCGGCTAAACGATATGATATTAGAACTTATAGTATTGAAGAGGTTAGAAGAAAATCACCGTACGAATGTGATATCTGCGGTGAGCAGTTCGAACGGAAGACTTCGATGACCAAGCATATTCTAACTTTACACGTGTCTGGTGGATCGAAGAAAGGCGTTATTGTTAATCCAAAATTAGACACGAGTTGGACAGAAATAAAACGAGCAAAGAAGTATAATCTAGTGAAACCCTACAAATGCGAAAAATGCAGTAAACGATTTAATATGCTGTGCAATCTTAAACGACACGAAGTAATACACACCAACCTTTATAGCTTCTCATGCGAACACTGTACGTGCTCGTTTAAGCGCAGCGTTGATCTGGCACAACACACTAGAAGTCATCATCCAGAAATATCTTGGAAGTTTCGGTGTGACAATTGTAATTTAGTGTTCAATACTTCGGCTGATTTGAAAAAACATCAAGCCAACACACACGAGGACCAACAGTATCACTGTCTACACTGCCCCCAATACTATAAGCATTTGTCGGACTTTGAAAAACATGCCGCACAGATGCATGCCACAAAATGGTCATCATGTCTAACGTCAACCATGTACCGTTGCTCGTACACGTGTGATGAATGCGGACGTGTGTTTGATCGTCGCAGCAATCTCAAGCGACACCGTGTCACCCACAAAGACGAGTACATGTTCTCGTGTGAGATTTGCTCGAAGCAATTCAAGACTATCGCAAATCTAAAGGCACACCAGCAATTGCACATAGCCGATCAATCTGATACATCGTATGCATGTGAAACATGtggaaaattgtttaaattacgACGTGGTCTCGTTCGTCATGTCCGGAATGTTCATGCGGATGAGAACATAGTACAGAGTTATATTTGTGACATTTGTAAGAAAGAGTATTCTTCGAAGAAAAAACTTACAGAGCACATGACTTGTCATTCGACAGATCGACCGTGGATCTGTATCGAATGTGGCAAACAGTTTCATCGTGCCAGTCAATTAAAATCACACGAGGTCTTTCATCAGCCGGTTGGTTCTCTTAAGTGCAGCATGTGTGACAAACGCTTTAAGAGAACTAACGATCTGAACAGACACCTTCAATTACACTCGAAAACGCACCCGTTTGCATGTACGTCGTGCTCAAAGACATATCTTTCGCATAATGGCCTGATGAAACACTTGAAGATATGTGAATCTGACCTAGATACAACTAAATCGATTACATTACCGATGAAGCAGTTAGAAGTAGAAATTATGGCAGACATTACAGAtgcagaaatattaaaatgtgaagacctttattttgatgaagaatatttggaataa
Protein Sequence: MTNTKEDVRIQSSSIVTKPPDEENTEEVRIQLRSSCRLCLKPRQNVNLFSELEDSLKYSEIAMLLVSIVIDENDDLPQSICNGCSSKLTFFLEFQRVCVASEVRLSSVFSRNVQKAETTCEEEMIGEDDSSWPEAYVVQKSELTSEEEEMIEEIASSLAESDIEQESAKRYDIRTYSIEEVRRKSPYECDICGEQFERKTSMTKHILTLHVSGGSKKGVIVNPKLDTSWTEIKRAKKYNLVKPYKCEKCSKRFNMLCNLKRHEVIHTNLYSFSCEHCTCSFKRSVDLAQHTRSHHPEISWKFRCDNCNLVFNTSADLKKHQANTHEDQQYHCLHCPQYYKHLSDFEKHAAQMHATKWSSCLTSTMYRCSYTCDECGRVFDRRSNLKRHRVTHKDEYMFSCEICSKQFKTIANLKAHQQLHIADQSDTSYACETCGKLFKLRRGLVRHVRNVHADENIVQSYICDICKKEYSSKKKLTEHMTCHSTDRPWICIECGKQFHRASQLKSHEVFHQPVGSLKCSMCDKRFKRTNDLNRHLQLHSKTHPFACTSCSKTYLSHNGLMKHLKICESDLDTTKSITLPMKQLEVEIMADITDAEILKCEDLYFDEEYLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -