Bcin022697.1
Basic Information
- Insect
- Bolitophila cinerea
- Gene Symbol
- -
- Assembly
- GCA_010015015.1
- Location
- JAAAKO010000176.1:292881-296910[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0055 0.39 11.6 3.9 2 23 280 301 279 302 0.94 2 12 0.16 11 7.0 1.0 1 21 306 326 306 330 0.92 3 12 9e-05 0.0064 17.2 0.3 1 23 479 502 479 502 0.92 4 12 0.00042 0.03 15.1 0.6 1 23 529 552 529 552 0.94 5 12 6.9e-06 0.00049 20.8 4.5 1 23 558 580 558 580 0.98 6 12 8.5e-05 0.006 17.3 0.1 1 20 586 605 586 608 0.92 7 12 0.00096 0.068 14.0 4.9 1 23 614 636 614 636 0.97 8 12 2.9e-09 2e-07 31.4 0.5 1 23 642 664 642 664 0.98 9 12 0.00012 0.0083 16.9 3.2 1 23 670 692 670 692 0.98 10 12 0.038 2.7 9.0 3.3 1 23 698 720 698 720 0.98 11 12 4e-05 0.0028 18.4 1.3 1 23 726 748 726 748 0.97 12 12 4.2e-06 0.0003 21.4 2.5 1 23 754 776 754 776 0.98
Sequence Information
- Coding Sequence
- ATGGCTGACATCAGCTATGTTGACGAATGTTTTCTAGTGTACAATTCGCAAATATGTCGTTTGTGCGGAGAAGAAAACGCCAACGGTTCGGTCCTGTTTAGCGCCGACGAGGAGGACATAAGTTTTCTGATAAACAACTATCTGCCATTGAAGatttccgACGACGGAAAGTACCCTAGATGGATCTGTCCAGGATGTCACTTACAAGTGGAGTCAACGGTGGAGTTTTTCGATCTGGTAATGGTGGGCCAAGAGAACCTTCGCAACttgataaaattacaaatagcAGATGGAAAAACTCTTTCTGATCCAATATCGCATCAGCAGGAAAGCACATTAGCCTCAGTTTCACAAGATAAACACACCttatacaaaaacaaccatGATATATGTTTTCGTATGGACGGAACTGAAAAGCCTAAACGAAGACGAGGGCGTCCACCAAAACCACCACCTGACGTTCTTCTTGCTCAACAGATTGAGGCGGAAAATAAACGCTTCGAAGAAGAACTGAAACGACAGGCAGCCGACACAAAAGAAAAACTTGACACAGAAATGGACGGCTGTCGAAAGAGGCGACAAATCAAAATCCCTTCAAGATTCCAGGAAGTTGTTCAGGGCAAAGAGCTGGAACGCATTTACGTGGAGAAAGGAGTAATCGATAAATCTGAAACATTATCAGACGATGAATATTCGCCAATGCAGGACACAGAAGTAATAGATTACTCGGACGATATAATTGGACATTTGCAGGACACCGATGGTTCGACGATTAATGAGATTTTTGACCACAAGAGTCGCCGGAAAAatgGAATTAAAAAGCGAAAAACAAAACTCGTTTGTGATATCTGTAGTCGAACATTTACTCATGAATTTCGATATATGGCACACCGGATGACACACCATAACGTTCGATACGAGTGCACAGAATGCTGTGAGAACTTCTCTGAACGTAAACTTTTGACTGATCATCAGGCAGAGTCTGGGCACAGAGGAGAGGGAATCATTGAAAGTTTAGAGgAAAACGATGCAAAACTAAATATAGTAGACTATCAAACTCAAACTGAGGCCACCGTCGATGAGATTGACGGCACAACATCAACGGGTTTTCAAGAATTACAAGCTGTCTTGGAAGACTACAATCACATCGAAGAGGCAGCAAAAGTACTGTACGGCCTACAAAATAGCGATAAATTTGACAGTCATCCTCCAAATACTACTACCAACGTCTCTGTGCCAGATTTCATGCCAGACTATGTAGGTATTCAGCAGATTCTCCCGGCTGAAGGGCAAATGCAAAACGAACAGCACCAAGACATTATTGCGATGACCCGTAATGAGGAGGGCAGTGTTCTTTACGATACCATGCAATCGGAGGAAATCGTCATGCACGAAGAACCGGCAGTATCTGTAGACATAAAGCCAAAAATTCGACATGACTGTGACATTTGCAACAAATCCTTTGGTAATCCTGCTCAGTTGACTCTGCACTATGAACTAATCCATGATCCTGAGGCTACTGAGACGCATGAATCTAgcacagtcgaaacagtgggtCAGGAGGACGAGACAAATGAGGCACAATATCCGTGCGACAAATGCAAACGGGTGTTCAAGAATCCCAGCTCAGTGCTGTATCACAAGGAATCCGAGCACAACTCCGGCAGACGATTCGTGTGTAGTAAGTGCAGCAAGAGCTTTAAGCACAAACAGCTTCTCCAGCGACATCAGCTGGTTCATTCTGAGGATCGTCCGTTTCCGTGTGATGTGTGCGGGGCATCCTTCAaaACAAGACCAAATCTTATGAATCATTTACCAAAACACACCGGCGTCAAGAAACACGAATGCAAAGTGTGCAATAATACGTTTGCACACAAGACTAGCTTAAAACTACACTATCGCTGGCACGCCGGATTGAAGCCTTTCGTTTGCAAGGAATGCGGAAAAACTTTTACGCAAAACGGAAACCTGCAAGAGCATATGCGGATACACTCGGGTGAAAGACCGTACGAGTGCACGCTGTGTGACAAAAAGTTTAAGACAAGCTCGCAGCAACGTATTCACAGTAAACGCCACATTAACTTTAAGCCGTTTGAGTGTCAGGAGTGTTCGAAAACCTTTTTGCATCTAGAGGTCTATCGAACTCATCTGCGCAGACACAACAACGAAAAACCGTTTGCATGCACGATATGCACAAAGTCATTTGCCGAGCACTGGGCACTGAAGAAGCACACACGCATTCACACCGGCGAGAAACCTTACAACTGTAATGTATGTCAAAAAGCATTCGCTGATTGCTCAAACCTGGCCAAACACAAAAAAactCACGAGAATCAGTCTAATAAAAAATTGGCAGCCGCGATTGAAGAGGCTGAAAACACTGACGGAACGATTACGAATGCTGAGGCGTTTGACACCGCTGGAGCAACGTCAAATATGGTTGGTGAATCATTGCCAGAAGGAGCAGTTTGGCGTTTGCTGGACAACGACGGACTGCCCAATGATAATCACGATGATAACCAAATCATTTACGTGACTTATCAGGATCCAAATGATCCAAGCGGCAATAAATCATTGCAAATGATTAGCCAAATGAATACCTCGGAAATGGATTTGATGGAAACGCAGACGTCAGTTCTAGAAGCGGAGCTAGAGGAACGGCTGGTTGCAGCTTCTACAAATCTATCCGATGACATCGAGTATCTGGACTCAAACAATTACTCGACACACGACAATCCTACAGTTACATATATCGAATCCAAAGAACCGTATGTGGACCCAATGAGCTTACAATTTGTTCCAAACGAAATGCCAATTCAGTTCAACGAAGACGGATCATTGTCCAAAGTCATGGTGCGGCTAGAcTCAAATCCAAATGATGCTGGTTTCGGAGAAAATACTGGACAAACGGTTGAGCTAGTGATGAGCGATGGCCGAAAAGTCACCCTGATGGCGCAGTATCCGGAACCTCTTGACCTTACGTCGGAGTTCATATCAATTAcctaa
- Protein Sequence
- MADISYVDECFLVYNSQICRLCGEENANGSVLFSADEEDISFLINNYLPLKISDDGKYPRWICPGCHLQVESTVEFFDLVMVGQENLRNLIKLQIADGKTLSDPISHQQESTLASVSQDKHTLYKNNHDICFRMDGTEKPKRRRGRPPKPPPDVLLAQQIEAENKRFEEELKRQAADTKEKLDTEMDGCRKRRQIKIPSRFQEVVQGKELERIYVEKGVIDKSETLSDDEYSPMQDTEVIDYSDDIIGHLQDTDGSTINEIFDHKSRRKNGIKKRKTKLVCDICSRTFTHEFRYMAHRMTHHNVRYECTECCENFSERKLLTDHQAESGHRGEGIIESLEENDAKLNIVDYQTQTEATVDEIDGTTSTGFQELQAVLEDYNHIEEAAKVLYGLQNSDKFDSHPPNTTTNVSVPDFMPDYVGIQQILPAEGQMQNEQHQDIIAMTRNEEGSVLYDTMQSEEIVMHEEPAVSVDIKPKIRHDCDICNKSFGNPAQLTLHYELIHDPEATETHESSTVETVGQEDETNEAQYPCDKCKRVFKNPSSVLYHKESEHNSGRRFVCSKCSKSFKHKQLLQRHQLVHSEDRPFPCDVCGASFKTRPNLMNHLPKHTGVKKHECKVCNNTFAHKTSLKLHYRWHAGLKPFVCKECGKTFTQNGNLQEHMRIHSGERPYECTLCDKKFKTSSQQRIHSKRHINFKPFECQECSKTFLHLEVYRTHLRRHNNEKPFACTICTKSFAEHWALKKHTRIHTGEKPYNCNVCQKAFADCSNLAKHKKTHENQSNKKLAAAIEEAENTDGTITNAEAFDTAGATSNMVGESLPEGAVWRLLDNDGLPNDNHDDNQIIYVTYQDPNDPSGNKSLQMISQMNTSEMDLMETQTSVLEAELEERLVAASTNLSDDIEYLDSNNYSTHDNPTVTYIESKEPYVDPMSLQFVPNEMPIQFNEDGSLSKVMVRLDSNPNDAGFGENTGQTVELVMSDGRKVTLMAQYPEPLDLTSEFISIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -