Bcin004197.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bolitophila cinerea
Gene Symbol
-
Assembly
GCA_010015015.1
Location
JAAAKO010001227.1:8701-11709[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 5.2e-05 0.0037 18.0 0.5 1 23 190 212 190 212 0.98
2 12 5e-05 0.0036 18.0 1.3 2 23 218 240 217 240 0.95
3 12 0.25 18 6.4 0.3 1 23 246 268 246 268 0.97
4 12 4.3e-05 0.003 18.2 1.4 2 23 308 329 307 329 0.95
5 12 0.12 8.3 7.4 4.3 1 23 417 440 417 440 0.97
6 12 3.2e-05 0.0023 18.7 1.1 1 23 526 548 526 548 0.97
7 12 1.6e-07 1.1e-05 25.9 3.0 1 23 555 577 555 577 0.98
8 12 7.8e-08 5.5e-06 26.9 1.7 3 23 589 609 587 609 0.96
9 12 6.9e-05 0.0049 17.6 2.8 1 23 615 637 615 637 0.99
10 12 1e-06 7.2e-05 23.4 2.2 3 23 645 665 643 665 0.97
11 12 2e-06 0.00014 22.4 1.2 1 23 671 693 671 693 0.99
12 12 0.021 1.5 9.8 0.0 1 23 699 723 699 723 0.93

Sequence Information

Coding Sequence
ATGGCCGAGATGGACGTAGACATAGAGTACGACCTCGAGAACATCTGCAGATCGTGCCTTAGCTACAGTGCCTCCTTGACTTCGGTCTTCGATCCGGAAGATTCGATCTCAGGCTGCACCACTACAAGAATTGCAGGCGATGGTGATACCGGTGGCGATGGTGTACACGACAAAAGTGAAACATTGTTTCACATAATAATGGCTTGCACAAAGGTTCAGATACTCAAAGACGACGGAATGCCGTACAAAATATGTAACAGTTGTCAGAAAGAAGTGTACAGTGCGTTTGCGTACAAGAAGAAGTGCGAGGACAGTGACGCAAAACTACGCAGGTATTTGCAACGAAAGTACCCACCGAATGTTAAGATTGAGATTGCAGAATTTTGTTCGGTCGAGATAAAAAATGAGATTCCAAACAAATTAGATGAGCTCGATTTAGTTGTTGAGAATGTCCAAGAAGATTGTAGTACGATTAAAGTAGACGAGCTCGTAGACAGTCAAGAGATTGAGGAACCATTGATCACGGATGAAATTAGTGGAATTGATATAGATACATCGGAGGACCGATTTACATGTGATCTTTGTCCAGAATCGTATGTAGATCAAAGATCTTTGAGACTGCACAGCAGAACGCACACgaatcaaattcaaaaatgtccaaGCTGTGAAAAGAGCTTCGTTAAAATAAGCCATCTGAATCGTCATATCCTTCAAGTACACGATAAGATAAAGGAATTCGATTGTGACCTATGTGACGATAAATTCGAAAGTGCCACTGAGAAAAAAATGCATCTGGCTACTCATAATCCAGCAAGGAAACGCGGTAAATCTGCAAAAACTATCATGCAAAGCCCTAGCTGTTTGCAACCGAATTACGATTCTTTCTATTGTCTGGGAAATGCAAACGCTACCAAAAAGTGTATATGCACGATATGCGATGAATCATTTACGAGAATCGCAAAACTCCGCAAGCACTTGAATTGGCACATGAATGATCCGCTGTCATTCGACAACGTTGATCTACACTCTCGACCGCAGCTTTTCGATACACAAGCCGAAAACGTTTCCTATCGCACTAATGCCTCTCTGATTGATGATATTCAACAACAGCTTAAGCTCCAAGACAACCATCGATTCTATCAGGTGCTAAATCAGTCTGGCTGGGAATTAGATCTATACGATAGCGAGACCGACAGTGAGAGTGATAATGAGTTTCTTGTCAGTGAGTGGTCGTCTCCAGTGCATGAGTACAGTTGCTCAAAATGCAGTCTTACCTTTGATCGAGTGCACAAGATCATGAGTCATATGCATTCCGAACATACGGCTGCAGATTTCGAGCATGTGTGCATTTACTGCCAGCGTGTGTTTCCGTGTAGTTCAATTCTAGTAAAGCATATTCAGCTTCAGTGTGAGAATCCACACAAGACCATCTCGTGCCACCTGTGTCAGGTACGTTTTATGTGGCAGAGTAGCTGTGACGAGCACGTTCGGGTGCAACATGCGTCTGTCGCTGCCAAAGAATCCGCGGTACTGAGAAAAACAAAGACAACGGATGCAGTTCAGAAGGTGAAATCGTTTATATGTGATATTTGCTCAAAGGGTTTTTATCGAGCCGAACATCTGGATCGTCATCGAAATATTCACGTTCCTTCCGAGAAAAAGTTCTCCTGTGACCTGTGCAAGAAGAAATTTAATCGCAAAGATAATTTAAAGTCACACATGCGAGTCCATAAGCCAAACAAGGAAGACGGTGATAAGCATTTATGCGTCTATTGTGGTCGTAGCTTTTCGAATTCATCGAATTTAATCGTGCATATGCGAAGGCATACCGGCGAGAAACCTTACAAATGCGATTTGTgtgaaaaagGATTTCCGCGGTCATCGGATTTGCAGTGCCATCGACGCACGCATACCGGAGAAAAGCCCTGCCTGTGTACGATTTGTGGAAAAGgtttcTCACGTTCTAACAAACTGGTGCGCCATATGCGCATACACACCGGTTCCAGACCGTACAAGTGTTCGTACTGCGCACGAGCCTTTACGCAGTCCAACGATCTCACGTTACACATTCGCCGGCACACCGGTGACAAACCGTATGTGTGTGGAATTTGCGGTGACCGATTCATACAGGGAACCGCTCTGGCCACACACAGGCGCATGCAGGGCCACTACGAAGAGGTACAACAGCAGAATGTACCGTATGCCAGTATCAGTGTGAACAATCCGAATCGTTTTACGAATGTGAATCGCGTGAATCGTATCGGTCTGACTGCCATCGTGGAGAACGCTTCTGTGAAACAGGAATCACACATGCTTGCCGCACAGCTGCCATCACAACACGACAAACATCTGCATATCGGGCATGGCAGCACACCTTGTGACTCGAACGATGTCTCGACGATTCGTCTAAATCAGGGCACGCATAACAATGACTCTCGTCAAGTCATTCCAAATTTTCAAATGACAACACAACAGAATGAAGCTGCGTATCTGTCGGCGGCGACAAACGGTGGAAATCCCTACCAATTGCATGGTATCGGCGAGGTACCGTCAATGTTCTCCGTGTCGAACTACAACACGCAAGGCTATAATTAG
Protein Sequence
MAEMDVDIEYDLENICRSCLSYSASLTSVFDPEDSISGCTTTRIAGDGDTGGDGVHDKSETLFHIIMACTKVQILKDDGMPYKICNSCQKEVYSAFAYKKKCEDSDAKLRRYLQRKYPPNVKIEIAEFCSVEIKNEIPNKLDELDLVVENVQEDCSTIKVDELVDSQEIEEPLITDEISGIDIDTSEDRFTCDLCPESYVDQRSLRLHSRTHTNQIQKCPSCEKSFVKISHLNRHILQVHDKIKEFDCDLCDDKFESATEKKMHLATHNPARKRGKSAKTIMQSPSCLQPNYDSFYCLGNANATKKCICTICDESFTRIAKLRKHLNWHMNDPLSFDNVDLHSRPQLFDTQAENVSYRTNASLIDDIQQQLKLQDNHRFYQVLNQSGWELDLYDSETDSESDNEFLVSEWSSPVHEYSCSKCSLTFDRVHKIMSHMHSEHTAADFEHVCIYCQRVFPCSSILVKHIQLQCENPHKTISCHLCQVRFMWQSSCDEHVRVQHASVAAKESAVLRKTKTTDAVQKVKSFICDICSKGFYRAEHLDRHRNIHVPSEKKFSCDLCKKKFNRKDNLKSHMRVHKPNKEDGDKHLCVYCGRSFSNSSNLIVHMRRHTGEKPYKCDLCEKGFPRSSDLQCHRRTHTGEKPCLCTICGKGFSRSNKLVRHMRIHTGSRPYKCSYCARAFTQSNDLTLHIRRHTGDKPYVCGICGDRFIQGTALATHRRMQGHYEEVQQQNVPYASISVNNPNRFTNVNRVNRIGLTAIVENASVKQESHMLAAQLPSQHDKHLHIGHGSTPCDSNDVSTIRLNQGTHNNDSRQVIPNFQMTTQQNEAAYLSAATNGGNPYQLHGIGEVPSMFSVSNYNTQGYN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-