Bcin021747.1
Basic Information
- Insect
- Bolitophila cinerea
- Gene Symbol
- -
- Assembly
- GCA_010015015.1
- Location
- JAAAKO010003882.1:3443-7096[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 9.7 6.9e+02 1.4 2.3 3 23 259 276 258 276 0.70 2 17 1.9e-05 0.0014 19.3 0.8 1 23 282 304 282 304 0.96 3 17 0.0018 0.13 13.2 1.8 1 23 310 332 310 332 0.97 4 17 0.0021 0.15 12.9 0.9 1 23 338 360 338 360 0.98 5 17 0.065 4.6 8.2 0.4 1 23 366 388 366 388 0.93 6 17 0.0017 0.12 13.2 0.4 1 23 394 416 394 416 0.97 7 17 0.067 4.7 8.2 0.5 1 21 422 442 422 443 0.94 8 17 0.075 5.3 8.0 2.2 1 23 445 468 445 468 0.92 9 17 0.00016 0.012 16.4 4.0 1 23 474 496 474 496 0.98 10 17 2.6e-07 1.8e-05 25.2 1.1 1 23 502 524 502 524 0.96 11 17 0.0024 0.17 12.8 0.3 1 23 530 552 530 552 0.98 12 17 0.0011 0.078 13.8 1.8 1 23 558 580 558 580 0.98 13 17 2.8e-05 0.0019 18.9 3.1 1 23 596 618 596 618 0.99 14 17 0.012 0.87 10.5 1.2 3 23 626 646 624 646 0.97 15 17 6.7e-06 0.00047 20.8 1.3 2 23 653 674 652 674 0.94 16 17 0.00017 0.012 16.3 0.2 1 23 680 702 680 702 0.99 17 17 0.097 6.8 7.7 0.6 1 23 708 731 708 731 0.96
Sequence Information
- Coding Sequence
- ATGAGTGCAATACAGTGCATAGATATTAAAGACTTTCCCAACATATGCCGATTTTGTCTACAAAATAAATCCCTGCAACCGATCATCAAAACATATGTAGAGGATGATGATACAGTTTCTGCAGATCTGGATATTAAAACAATGACAGAAGTATGCCTAGGAATTCAGGTACATGCAACAGATACTCTtccattgaaaatatgtaaaacgtGTACAGATACTTTGATTGTCAGTCATGTGTTCCGGACGAAATGCCAACAGAGTGCTGATATTTTGCTTAATATCCTAAATCATAGCATTGCCATTTGCACAAAAAAAGAGCTTCTCACCATTAACACAGATGAGgaCTCTTCGGAAGTAATGTACGACGAAAATCTGCCCATTGATATAGATACGGATACAATAAAATGCGATTCGGACAGCTCAATAATTCTAGAAGCTGAAACCTTGTCTGTCATCGAACCAAAGACCAAACGAAGAAATCCCGTGAGACAAAAGACAAAAACTTCAACAATTGCTTCACTAAGAAAGGCGAATACTACAAAGAAATCTAGCTCACCGGTTGACCTAGAATTAGTAGAACACAAGGCTGACCCAATAAAGTCTGATGCTAAAATCCAACCTGCCGCAGAGCTGCAGATCGAAAAAGTAAAGCGAACGCGTACATCTCGCAAAATCAGTAAACTTAATACAGCAGATAAAACGGAAGACTCGTCAACGGTGACGGAAAGTGCCAAACAACCAAGAGTacgtaaacaaaacaaaccGGAACAGTGCGATGTGTGCGGCTTTATTTCACGGTCGCTCAAGTCCCATATGCTGGTGCACACACAGGAGAGGAACTATGAGTGTGACTTTTGCGGCAAAAAATTTTCATTGCGCGCCAGCCTCAAGAACCACATTTTTGCTCACATAAATATCAgGCCCTTTCCATGCACGCTCTGTGGTCTGTCCTTTAAGCACGACTATATTCTTAAACGGCATCAGACCGTGCACTCAACTGTTTATCCCTTCAAGTGCAACATTTGCGAGAAACCATTCAAATGGCACAGTGACATGGTCATCCATCGTATGGTTCATTCAAATGTGCGCAAACACAACTGCACATTCTGCGGCCAGAACTTTTTAAGTGCTGCTGGCCTAAAGAATCACGTTGGCATTCACACGGGTTATCGACCGTTTGCCTGTGGTCTGTGTGAACGCCGTTTCGTAAACACCTCCTCGGCATCGGTGCATCGGCGCACACACCTTATCGGCGATGCgtttaaatgtgaaaaatgtgGCGTTGCTATcaaacattttactttattcaaAATGCACATAGAGATGTCGTTCAAGTGTTCCTTTTGCCCGGAAACGTTTGCACTGAAGCAATACCGCAGTCGACACCAGTACGAAACACACTCCGAAACGTTTCGATTCAAATGTGAAACGTGTGGCAAGAGTTTTAAGCGTTCGTTTGACCGGATGTTTCATATGCGCACGCACACCAACACCCGAAACTATCGTTGCGTACATTGTGGCAAATCCTTTACAACACCAACGAATCTTCGCAATCACGTGGGCATTCATACCGGCGAAAGACCATATCCGTGTGGTTTGTGCCCACTTACGTTTGTGTTCTCGTCGACCGCATCAAATCACCGACGCTCGCATTGTGTTGCTGGTCACTTTGTCTGTGAACATTGTGGCGAGAAGGTAGCGAATTACACAAAGTTCAAGATGCACATGGAGAAACACCGTATGCTGTTACCTGGTCATGCGCACGAAGCACTGAGACTGAGATTCAAGTGTGCCGAATGCGGTATACGCTTTCCGTCGCGCTGTCACCTCGATCGTCACATACAAACGCACACGCGCTTACGTCCGTTCGGCTGCGAACGTTGTGGACGCCATTATGGTCAGATCCAAAATCTGCGCACGCACGAACTCACGCACACCGATGTGCGTCTGTGCAGTTGTGAGTACTGTGGCAAATTGTTTCGCAGTAAAGGAAATCTGCAAAGTCATATTGGTGTACACACTGGCACGAGACCATTCAAGTGTGGCATTTGCTCACAAGGTTTTACTAGTTCGTCCAGTGCAGCTATTCATCGGCGTGTACACAAGATCGGACCGTATTTTCAGTGTCCCCTATGCTTGTTGAACACAACCAACTTTCGCATGCTACTGGCTCACACTCGAGATTTTCACACAGACGCAAAAGCACAATCCAAATCCTAG
- Protein Sequence
- MSAIQCIDIKDFPNICRFCLQNKSLQPIIKTYVEDDDTVSADLDIKTMTEVCLGIQVHATDTLPLKICKTCTDTLIVSHVFRTKCQQSADILLNILNHSIAICTKKELLTINTDEDSSEVMYDENLPIDIDTDTIKCDSDSSIILEAETLSVIEPKTKRRNPVRQKTKTSTIASLRKANTTKKSSSPVDLELVEHKADPIKSDAKIQPAAELQIEKVKRTRTSRKISKLNTADKTEDSSTVTESAKQPRVRKQNKPEQCDVCGFISRSLKSHMLVHTQERNYECDFCGKKFSLRASLKNHIFAHINIRPFPCTLCGLSFKHDYILKRHQTVHSTVYPFKCNICEKPFKWHSDMVIHRMVHSNVRKHNCTFCGQNFLSAAGLKNHVGIHTGYRPFACGLCERRFVNTSSASVHRRTHLIGDAFKCEKCGVAIKHFTLFKMHIEMSFKCSFCPETFALKQYRSRHQYETHSETFRFKCETCGKSFKRSFDRMFHMRTHTNTRNYRCVHCGKSFTTPTNLRNHVGIHTGERPYPCGLCPLTFVFSSTASNHRRSHCVAGHFVCEHCGEKVANYTKFKMHMEKHRMLLPGHAHEALRLRFKCAECGIRFPSRCHLDRHIQTHTRLRPFGCERCGRHYGQIQNLRTHELTHTDVRLCSCEYCGKLFRSKGNLQSHIGVHTGTRPFKCGICSQGFTSSSSAAIHRRVHKIGPYFQCPLCLLNTTNFRMLLAHTRDFHTDAKAQSKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -