Basic Information

Insect: Bolitophila cinerea
Gene Symbol: -
Assembly: GCA_010015015.1
Location: JAAAKO010005887.1:5169-7780[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0005 0.036 14.9 0.7 1 23 276 298 276 298 0.95

2 12 0.00021 0.015 16.1 0.8 1 23 307 329 307 329 0.98

3 12 3.6e-05 0.0025 18.5 0.3 3 23 338 358 336 358 0.96

4 12 4.3e-07 3.1e-05 24.5 0.4 1 23 364 386 364 386 0.99

5 12 3e-05 0.0021 18.7 3.9 1 23 393 415 393 415 0.99

6 12 1e-05 0.00072 20.2 0.2 1 23 421 443 421 443 0.95

7 12 4.5e-05 0.0032 18.2 0.3 1 23 449 471 449 471 0.98

8 12 9.5e-06 0.00067 20.3 0.3 1 23 477 500 477 500 0.95

9 12 6.1e-05 0.0043 17.8 2.6 1 23 506 529 506 529 0.95

10 12 7.3e-06 0.00052 20.7 1.5 1 23 535 557 535 557 0.99

11 12 1.4e-05 0.00097 19.8 0.7 1 23 563 585 563 585 0.97

12 12 0.00069 0.049 14.5 0.3 1 23 591 615 591 615 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0005	0.036	14.9	0.7	1	23	276	298	276	298	0.95
2	12	0.00021	0.015	16.1	0.8	1	23	307	329	307	329	0.98
3	12	3.6e-05	0.0025	18.5	0.3	3	23	338	358	336	358	0.96
4	12	4.3e-07	3.1e-05	24.5	0.4	1	23	364	386	364	386	0.99
5	12	3e-05	0.0021	18.7	3.9	1	23	393	415	393	415	0.99
6	12	1e-05	0.00072	20.2	0.2	1	23	421	443	421	443	0.95
7	12	4.5e-05	0.0032	18.2	0.3	1	23	449	471	449	471	0.98
8	12	9.5e-06	0.00067	20.3	0.3	1	23	477	500	477	500	0.95
9	12	6.1e-05	0.0043	17.8	2.6	1	23	506	529	506	529	0.95
10	12	7.3e-06	0.00052	20.7	1.5	1	23	535	557	535	557	0.99
11	12	1.4e-05	0.00097	19.8	0.7	1	23	563	585	563	585	0.97
12	12	0.00069	0.049	14.5	0.3	1	23	591	615	591	615	0.93

Sequence Information

Coding Sequence: ATGTCGCAGAATTCTGATAAAGCAACTACATTTCATGGAAgtgaaacattttgttttatatgccACAATTCATGTCAAGAAAAGAATACAATACACCTATTTGAACAGAAGttacgGCAGTCTCCAAATGATACACCATATATTGAAACCCTAGCTTCTATTCTGAGGCGACCAATTGACGAAAATACAGCACACTCAAAAATCATTTGTAAAAAATGCGAAAGTAATTGCAATGAATATGAAGATCTTTTCAATCGTGTGAacgaaattaaatacaatattattcgTTGCTTTAATAATACAGCTAGTATCTATGGTTTAGATCAAGTGTTTATAGAAGAAGAAGATATTGAAACAGATTTGGATAAAATTGGAGACAACGAATCTAATGACATTGCATCCCACTCAGTGTTTGAATCAAGTAATATAGAAGTAGATGATACTTTTGAAAACGAGACTATAATCCTACAAAAAATGGAAGACTCTGATGAAACGCAAGAGTTTATTATTGAAGAATACTTTGACGCAAACGATGCACCAAACATGGTTGAAGTGAGCACTGAACAAGATGACCATTTTCAAAACTTCCTAGATGATAGTTCGATTATTAGTAGCCATGAAcatgatataaaaaatgaacatgAAACCTTTCCAAGCGAGTCAAATGTGAAAGTTTTGGATGAGGAAGAAGAAGAAATAATGCATAAGCCTATATTTATGCGGGATGGTCTTAAATTCATTTGCCAGTTATGTACTCCAAATGATGTTGTTTATGATGGTCGAAGTATAGCTGTTCATATGCGTACGGAACATGGtgagaaaatacatatatgtgatATATGTGGATTTGATTTCCGAAAACGCAATGAATTAACGGAACATCTTGAAGAGCATGTACAAAGTAATCAAGATGGAGAGTTCCAGTGTGAAGTTTGCCAAAGAGTTTTCGGAAGCCTTCGTCTATTTCGTATTCACAAGCGAATTCATTACACAAATGTTAAGTTGTGGGCATGCAAGGAGTGTGATAAAAAGTTTCCATCGAGAAATTTACTAGAAGAACACACAAATATGCATACTGGCGAACGACCATACAAATGTCCAAATTGTCCTAAAGATTTTGCCTCAAAGTACACTTTGACCGCACATCTAAAGATTCACTCTGAAAGAAATAGACCTTACGAGTGTACAACAtgtaataaatcttttttcagTCACCAGAATCTTGCCCAGCACGAAAGAACTCACAGTGGAGTAAAAgagtatttatgtaatatatgcgaTAAAGCTTTTGGTACACCACATAATTTAGAAGTTCATAAAATTGTGCACACTGGATTTAAACCATTTATATGCCGTACATGTGGTAAAGCTTTTGCAAGAAGAGCGGAGATTAAAGATCATGAGAGAACACATACCGGAGAACGACCATATGACTGCGATATATGCGGTTCATCGTTTGCACAACGATCGAATTTAATGTCACATAAACGTGCAACACATTTAAATGATAAACGATATAAATGTGAAACGTGTGAGAAAAGTTTTAAGCGTCGACGTTTGTTAGAGTATCATAAAAAAGCAATGCATACTGGAGAGCGTCCATACAAATGTGAATCTTGTGGAGCAACATTCGTCTATCCAgaacattacaaaaaacatttgagaATTCACACTGGTGTGAAACCGTTTAAATGTGAAGTGTGTGGAAAGGCATTCAATAGTCGAGACAATAGAAATGCACATCGATTTGTGCACAGTGAAAAGAAACCGTatgaatgtttattttgtggTCAAGGTTTTATGCGAAAACCTTTGCTAATGAGCCACATGGAAACACAGAATCACACAAACTCTATGATCATAACAAATCATGCTCAGATTACAAGTGTTATTGATGAGAATGTTGAAGAAGACgtagaaattaaaaacatagaaCATATAAAAGATAATTACAATGATGATGCCATAGAAATAACCGAAGAggaGCTAATCGAAGAACATATTGAGGATGAACACGATGGTATTACAGAAGAGGATCTTATAATCGATGGACAAGTGCATTTTGAAGACGAATTAGGTGACACAGAAATTTTGTGCGAGGAACAATTATCCGATGTTTTAACGTCTGATCACATATTTGTAAGTGATGAAACACAGTATATCGAAGCGGAAGACTCCCAGTTTATTGATACTGATGATGGTGCAGTTCAGCTTGTTCAAATTCGAATACCTGATGTAAATGGTAAAGAGAAAATGACATGGGTTAATTTAGTTTCCAAATAG
Protein Sequence: MSQNSDKATTFHGSETFCFICHNSCQEKNTIHLFEQKLRQSPNDTPYIETLASILRRPIDENTAHSKIICKKCESNCNEYEDLFNRVNEIKYNIIRCFNNTASIYGLDQVFIEEEDIETDLDKIGDNESNDIASHSVFESSNIEVDDTFENETIILQKMEDSDETQEFIIEEYFDANDAPNMVEVSTEQDDHFQNFLDDSSIISSHEHDIKNEHETFPSESNVKVLDEEEEEIMHKPIFMRDGLKFICQLCTPNDVVYDGRSIAVHMRTEHGEKIHICDICGFDFRKRNELTEHLEEHVQSNQDGEFQCEVCQRVFGSLRLFRIHKRIHYTNVKLWACKECDKKFPSRNLLEEHTNMHTGERPYKCPNCPKDFASKYTLTAHLKIHSERNRPYECTTCNKSFFSHQNLAQHERTHSGVKEYLCNICDKAFGTPHNLEVHKIVHTGFKPFICRTCGKAFARRAEIKDHERTHTGERPYDCDICGSSFAQRSNLMSHKRATHLNDKRYKCETCEKSFKRRRLLEYHKKAMHTGERPYKCESCGATFVYPEHYKKHLRIHTGVKPFKCEVCGKAFNSRDNRNAHRFVHSEKKPYECLFCGQGFMRKPLLMSHMETQNHTNSMIITNHAQITSVIDENVEEDVEIKNIEHIKDNYNDDAIEITEEELIEEHIEDEHDGITEEDLIIDGQVHFEDELGDTEILCEEQLSDVLTSDHIFVSDETQYIEAEDSQFIDTDDGAVQLVQIRIPDVNGKEKMTWVNLVSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -