Bcin020336.1
Basic Information
- Insect
- Bolitophila cinerea
- Gene Symbol
- -
- Assembly
- GCA_010015015.1
- Location
- JAAAKO010000076.1:5228965-5231018[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.4e-05 0.00096 19.8 0.4 2 23 165 186 164 186 0.97 2 14 0.00073 0.052 14.4 1.9 3 23 192 213 190 213 0.97 3 14 2.6e-05 0.0018 18.9 0.4 2 23 217 239 216 239 0.97 4 14 3.3e-05 0.0023 18.6 0.1 3 23 252 272 251 272 0.97 5 14 1e-05 0.00071 20.2 3.6 1 23 278 300 278 300 0.98 6 14 0.00024 0.017 15.9 0.7 1 23 306 328 306 328 0.97 7 14 0.00077 0.055 14.3 1.6 2 23 347 369 346 369 0.94 8 14 6.1e-05 0.0043 17.8 0.7 2 23 382 404 381 404 0.97 9 14 0.0069 0.49 11.3 0.7 2 23 419 440 418 440 0.96 10 14 0.00012 0.0083 16.9 1.1 3 23 445 465 443 465 0.98 11 14 0.0027 0.19 12.6 4.4 1 23 472 495 472 495 0.98 12 14 0.0012 0.083 13.7 0.3 1 21 501 521 501 524 0.95 13 14 1.7e-06 0.00012 22.6 1.6 1 23 532 554 532 554 0.99 14 14 0.022 1.5 9.7 0.7 1 19 560 578 560 580 0.94
Sequence Information
- Coding Sequence
- ATGCCGGACACTCGGAGCATTAATGCCACAAACTATCGCTTGGTATGCCGATTCTGCTTGCAGGCCAAACCGAATATGTGCACGGTGGACAGCGCGGAGCAATGTGGAACAATGGTTCGCAAATGCTTTGAGGAGATCACCAGCTTAACGTTCGATGAGAGCGAGGACATTACAACGATGCTGGTATGTGACCAGTGTATGAACGAACTCGAGGCTGCTGCCAGCTTGCGCAATCGGTGCATTGAAATCAACATGTTGTGGGTAAACTTCATAAAGACCAATGCTTTAGAAGGCGTATCAGTTAAACGGGAAGTTAACGAGGAAAGTCTCAACATTGAAGATCATTTAAACACTGATTTCGATGATGCAGACTCGGTAGAGGATATCAAAACAGAAATTGAGTGCTGGCCTGAAATTGAACCGCAAATGACGAAGATAAGAAAAAGTTACAACAATAAGATGCCACGAAGGTCCAGATCTACACATCCACTGGAATGTGATACTTGTGGAATAACATTCAAGAACAAATCCATTCTCCTGCGACACATAAGGTCACACATTGATTCGTTTGGCTGTGAACAGTGCGACCACAAATTCGAATCAAAacaGATGCTCTCCTCGCACATTCGACGCATTCATTCCTGCATTCAATGTTCTATATGCAAAACGACCATTTCAACCGAAGAGAATCTTCGCATTCACATGCGACGCGAGCATTCGTCCAAGGAAAAGAAAAAACCCATCGAAGCCATTTGCAATGTGTGTGGACTAGTGCTGTCGGACAAAGGTGGCCTGCGACGTCATATGCTGCGCCACACTTCGGAGCCACCGTTCAAGTGTTCGTACTGTGACAAAGGATTCTATCGAAGCATTCATTTAAAGAGTCACACATTAGTGCACACCGGCGGTCAAGATCATGTGTGTCACGTGTGCGGTGAGAGATTCGTGGCAGCTAACTCGTTATTGCGTCACGTCGAGAAACATCAGGACGGCAGTAGGATCGTGAACACGAACGGTATGAATCGACCACAGAACCTTGAGTGCAAGGAGTGCGGAATCGTTTACAAACACTTCCGATCGTTGACGATGCATCGCAAGGAAATGCATGCGGCTGAAACGCTTAGCGTTAAGTCAACATTATTACAGTGTACTCTGTGCGATGCAACGTTGTCTAGTCGAACGGCATTGCGCAAGCACATGATGACCAAACATCCGGACCAGGAACCAAAGCTATGGCAACAAATTTTGGACACAGTGTGCGTGCGGTGCAATGCAACGTGTGCGTCCAAGGAAGATCTCAAAGAACACGTTAAAATTCACATGGAGTTCGGTTGTGACATTTGCAAGAAGAGCTTCGACAATAAGATTACACTGTCCAgtcatgtaaaaaaacattccaaTAATAATAGACCGTACAAGTGTGAGATTTGCGGATCATCACATATTCGTGCATCGCATTTGAAAGTGCATCATCGCAGAATCCATACGACGGATCGTCCGTTTCCGTGCGACCAATGTGACGCACGTTTTCCGGAAGCCTGGAACCTGAAGGAGCACATTCGCTGCGTACACAGCGAAATCGAGGAACGAATGTATCAGTGTTCTATGTGCCCGAAGCGATACGGAAAAAGCAGTCAGCTCACGATCCACATGAAAAAGCACACTGGACTGTCAAACTACAAGTGTGACCTTTGCTCGAGGAGCTTCTACAGTGGATTACAACTAACGCAGCACAACAATTGCGTACACCCCGAGTTAGAGAAATCGGTGGCAACAACTTCAGAAAATGCGTCCAGTGCATGA
- Protein Sequence
- MPDTRSINATNYRLVCRFCLQAKPNMCTVDSAEQCGTMVRKCFEEITSLTFDESEDITTMLVCDQCMNELEAAASLRNRCIEINMLWVNFIKTNALEGVSVKREVNEESLNIEDHLNTDFDDADSVEDIKTEIECWPEIEPQMTKIRKSYNNKMPRRSRSTHPLECDTCGITFKNKSILLRHIRSHIDSFGCEQCDHKFESKQMLSSHIRRIHSCIQCSICKTTISTEENLRIHMRREHSSKEKKKPIEAICNVCGLVLSDKGGLRRHMLRHTSEPPFKCSYCDKGFYRSIHLKSHTLVHTGGQDHVCHVCGERFVAANSLLRHVEKHQDGSRIVNTNGMNRPQNLECKECGIVYKHFRSLTMHRKEMHAAETLSVKSTLLQCTLCDATLSSRTALRKHMMTKHPDQEPKLWQQILDTVCVRCNATCASKEDLKEHVKIHMEFGCDICKKSFDNKITLSSHVKKHSNNNRPYKCEICGSSHIRASHLKVHHRRIHTTDRPFPCDQCDARFPEAWNLKEHIRCVHSEIEERMYQCSMCPKRYGKSSQLTIHMKKHTGLSNYKCDLCSRSFYSGLQLTQHNNCVHPELEKSVATTSENASSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -