Bcin013782.1
Basic Information
- Insect
- Bolitophila cinerea
- Gene Symbol
- -
- Assembly
- GCA_010015015.1
- Location
- JAAAKO010007556.1:75858062-75859951[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.001 0.072 13.9 3.7 1 23 81 104 81 104 0.96 2 17 3.9e-05 0.0027 18.4 0.6 1 23 110 132 110 132 0.98 3 17 0.00017 0.012 16.4 2.4 1 23 138 160 138 160 0.97 4 17 0.09 6.4 7.8 3.0 2 23 167 188 166 188 0.95 5 17 0.00081 0.057 14.2 1.9 1 23 194 216 194 216 0.98 6 17 2.2e-06 0.00015 22.3 1.0 1 23 222 244 222 244 0.95 7 17 0.00011 0.0081 16.9 0.2 1 23 252 274 252 274 0.97 8 17 0.0035 0.25 12.2 0.1 1 23 280 303 280 303 0.95 9 17 7.4e-07 5.2e-05 23.8 4.1 1 23 309 331 309 331 0.97 10 17 3e-05 0.0021 18.8 0.8 1 23 337 360 337 360 0.96 11 17 9.4e-06 0.00066 20.3 1.1 1 23 368 390 368 390 0.98 12 17 0.00057 0.041 14.7 0.2 2 21 399 418 398 419 0.93 13 17 0.27 19 6.3 3.1 2 23 443 464 442 464 0.97 14 17 0.0086 0.61 11.0 4.3 1 21 470 490 470 493 0.94 15 17 0.0016 0.11 13.3 2.6 1 23 499 521 499 521 0.98 16 17 0.098 6.9 7.7 0.2 1 23 529 551 529 551 0.94 17 17 0.00011 0.0075 17.0 0.2 2 23 560 582 559 582 0.93
Sequence Information
- Coding Sequence
- ATGGATCCCTTAGCAGAAGAGGCACTGTCTATTAGCTGTGTTCCACGCATTGAGCACGTTATACCGGATGTTGCCTTGAAAGCTGTTCGGATAAAGCTAGAGCAGAGCTGTGAGAGTGATAGTAATTCTccaaaatcgtttttaaaaattgaggaGAATAATACCATCGACGCAAATCTCGTGCACACGAACGACCATACAAAAGTAGTAAAGCGTCGCAATGACCTCAAATGCGGCCAGTTCACGTGCTGCTTTTGTCCGCGTACATTTACCAAGCTCAGTCTGCTCAGAGAACATTCCAAGGTGATGCACACCAGGCGTCCCCTGTTCAAGTGTGACATTTGCTCAAAAACCTTCGTGCAACTCATCATGATCCGACGCCACATGATCAATCACAGTGGCCTCAAAAAGTACAAATGCACCGTGTGCCAGAAGCAGCTAACATCACTGTACTCGTTCAAGCGTCACATGGATCTGCACACGATCGTCGAGCAGGTCGAGTGTAACGTATGCCATGCCCAATTCCAGGATCACCTGTCATACAAACGTCACATGTTCGAGCATGCCTCTAATCGATCTTTCGAATGTGATGTGTGCAAGAAAATGTTCACAGCAGCACATTTCCTGCGTTTGCACAAGCAAATACACTTGCCAGAGAAACCGTTCAAATGCGACGAATGCCCGAAGAGCTTCGCACAGTTATCTACGTTACGCCGGCACTCTTTCATACACTGTGCCGAGAGTGAAAAGTCTTTTGTTTGTGATTCGTGCGGAAAACGATTCAACGTTGGCTACCTGCTCAAGAATCACATGGTCGTGCATCAGGAAGTGAAACCATTTCAATGCGATGCCTGCGATAAATCATTTCTGGTGCGAAGCTCTTTGGTAATACATCAGAATGCTGTACACGCTTCTGAGAATCCGTACACATGTAAAACGTGTCATAAAAGCTTTACAGAGCCATCATCACTAAAGCGACACATGACACTGCACGATGAGAATCGTCTGTACACCTGCGAGAGTTGTGGTAAAATGTTCGACCAGGAACGGTACCTTATCAAACATAGGAATCTGTTGCACTCAACCACATCGGAGCGACCGTTTGAGTGCTCGCAATGCAATACAACGTTTAGCCGGTTCGAGAAACTCGAGGCTCACATGCTGAACCATGAGGATGAATTTAGTGTATTCAAAGAGTGCTATGTCTGTGGTCGTACCTATAAATCGGTGGTTTCGTTGCGCAGGCACATTGAAAAGTGTAAACAATCAAAAGTGGGTCAAGATAATAACGGTGCTACTGTTGTCCAGCCAGACAATGCCGAACTAAAGTGTCACATTTGCTTGAAGATAATGCAGAAGAAAGCGCAATTTGATAGGCACatgaaaaatcatttcattGAGAAAACGTTCAAGTGTGACGACTGCAATCAATTGTTCGGACGCAAGGAACATTTGATGCAGCACAATCGCTGTATGCATAATCCGGAAAAACCGTTCAAATGCACACAGTGCACGCGAACATTTGACACGGTAACGAAAATGGAGAAACACGCCAAGTCGCATATTGTGCCGCTGGTGAAAAGATTTGCGTGCGAATGCTGTGGCCTGCAGTTTGGCAGTGCCGAGGTCCTGGCGAAACATTTGCAATCACACAGACCGGATCCCGAGCGATTGTGGCCGTGCACCGTGTGCCCGCAGGTGTTTACATATGATGCAACGCTTAAGCGACACATGCAGTTTAGTCATCcgaattag
- Protein Sequence
- MDPLAEEALSISCVPRIEHVIPDVALKAVRIKLEQSCESDSNSPKSFLKIEENNTIDANLVHTNDHTKVVKRRNDLKCGQFTCCFCPRTFTKLSLLREHSKVMHTRRPLFKCDICSKTFVQLIMIRRHMINHSGLKKYKCTVCQKQLTSLYSFKRHMDLHTIVEQVECNVCHAQFQDHLSYKRHMFEHASNRSFECDVCKKMFTAAHFLRLHKQIHLPEKPFKCDECPKSFAQLSTLRRHSFIHCAESEKSFVCDSCGKRFNVGYLLKNHMVVHQEVKPFQCDACDKSFLVRSSLVIHQNAVHASENPYTCKTCHKSFTEPSSLKRHMTLHDENRLYTCESCGKMFDQERYLIKHRNLLHSTTSERPFECSQCNTTFSRFEKLEAHMLNHEDEFSVFKECYVCGRTYKSVVSLRRHIEKCKQSKVGQDNNGATVVQPDNAELKCHICLKIMQKKAQFDRHMKNHFIEKTFKCDDCNQLFGRKEHLMQHNRCMHNPEKPFKCTQCTRTFDTVTKMEKHAKSHIVPLVKRFACECCGLQFGSAEVLAKHLQSHRPDPERLWPCTVCPQVFTYDATLKRHMQFSHPN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -