Basic Information

Insect: Bolitophila cinerea
Gene Symbol: su(Hw)
Assembly: GCA_010015015.1
Location: JAAAKO010007556.1:3459270-3461705[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0058 0.41 11.5 4.4 1 22 79 100 79 103 0.90

2 13 4.1e-05 0.0029 18.3 2.9 2 23 152 174 151 174 0.96

3 13 0.044 3.1 8.8 1.9 1 23 180 202 180 202 0.98

4 13 0.00061 0.043 14.6 2.1 1 21 208 228 208 229 0.95

5 13 6.3e-07 4.5e-05 24.0 1.1 2 23 242 263 241 263 0.97

6 13 5.1e-07 3.6e-05 24.3 0.6 1 23 273 295 273 295 0.99

7 13 1.8e-07 1.3e-05 25.7 0.7 1 23 301 323 301 323 0.97

8 13 1.7e-05 0.0012 19.5 0.2 1 23 329 351 329 351 0.98

9 13 0.00026 0.019 15.8 4.3 1 23 357 379 357 379 0.96

10 13 1.6e-05 0.0012 19.6 2.3 1 23 385 408 385 408 0.96

11 13 2.7e-06 0.00019 22.0 2.4 2 23 415 436 414 436 0.96

12 13 3.8e-07 2.7e-05 24.7 1.1 1 23 442 464 442 464 0.99

13 13 0.00026 0.018 15.8 3.4 3 23 472 493 472 493 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0058	0.41	11.5	4.4	1	22	79	100	79	103	0.90
2	13	4.1e-05	0.0029	18.3	2.9	2	23	152	174	151	174	0.96
3	13	0.044	3.1	8.8	1.9	1	23	180	202	180	202	0.98
4	13	0.00061	0.043	14.6	2.1	1	21	208	228	208	229	0.95
5	13	6.3e-07	4.5e-05	24.0	1.1	2	23	242	263	241	263	0.97
6	13	5.1e-07	3.6e-05	24.3	0.6	1	23	273	295	273	295	0.99
7	13	1.8e-07	1.3e-05	25.7	0.7	1	23	301	323	301	323	0.97
8	13	1.7e-05	0.0012	19.5	0.2	1	23	329	351	329	351	0.98
9	13	0.00026	0.019	15.8	4.3	1	23	357	379	357	379	0.96
10	13	1.6e-05	0.0012	19.6	2.3	1	23	385	408	385	408	0.96
11	13	2.7e-06	0.00019	22.0	2.4	2	23	415	436	414	436	0.96
12	13	3.8e-07	2.7e-05	24.7	1.1	1	23	442	464	442	464	0.99
13	13	0.00026	0.018	15.8	3.4	3	23	472	493	472	493	0.99

Sequence Information

Coding Sequence: ATGAGCCGAAGACCTGCGCAAACATCTACAGcagtaataaatgtaaaaattaatgaaaacaatGAAATTGAATTAATGGACGAAGAAAATGCGCCAGACGAAGCTCTGATCAACGAAGATATCGAAATAATTGAAAGCTTGGAAGGTGAGCAAATCATTGATGATCAGAACGTGTTAGTGCCAAACAGTGATGGAACGATGTCCATTAAGACGCGCGATGCAACATTTGTTGAGCACATCTGTGGTAAATGcaaaaaagtttacaaaaccTTGCGTGGtcttaataaacatttaaatctaTGCCGTCATTTGCCTTGGTTAAAGCTTCCCGAAGACCACACGGTAACAGAAAGTCTCTTACCCAATAATCTAGACGAAGATCTTTCTAAAATACCTGAAGATGTTTGCTTTTGCTGTTTAGAGAATTTAGAAACTGCCCACagCGGTCATATTAAATGCAACTTCTGTCCTAAATCATTCAAATCGCACCTTAATCTGGAACGTCATCTTTTCACGCTTCACTCGGCCTCCACTAAGTTTCAATGTAGCATGTGCAATGCAACATGTCCCTCGCAACATGTGATGGATGCGCATGTTAGGTCACACGCTGATGGCAAACCGTTTGCATGTCAAACGTGTGCAAAGGAGTTTACGCGTAAGTATCATCTGGACAGGCATCTAAAGTTTACTACGTGTGAATCGGGCGTGCTCAAGCAGGAATTACCTTGTCATGTATGTAATCGCGTGTTTACCCGTACTGATAACTTAAGAGAACATTTACGCGTCCACATGGGCCAGCCAACACGACGCAAGGACTACCAGTGTCCATACTGTGAAAAGTCGTTTTACGGGTCGTCATTAATGAAcaTTCACATTCGAACTCACACAGGTGAAAAACCTTTTGCATGCGATCTGTGCGATAAATCTTTTTCATCGAATGGGGCACTACGAAAGCATCGTCGTATGCACACTGGTGAACGACCGTACGCATGTACTGAAtgTGACAGCGCATTCTCAGCTAAGGAAACTCTTAATCGGCACATGAAAATTCACTCAGGTGTACGACCCCACGAATGTACATTGTGCTCCAAGAAATTCATACAAGCTACCCAGCTAAAGGCACACATGTTTCATCACACCGGTGAGAACGGATACAAATGTAATCTGTGTGATAAAGAGTACAATCGCAAGTCCCGGTTGACACTTCATATGAAATTTGTGCACGAAAATGAGCAGAGTTTATCCTGTAAAACTTGCTCAAAATCATTTCAGCGAAAAGATGATTTGAAGCGACATATGGAATCGCACAATAAAACCAaagAATATGTGTGCGAAATGTGTGATAAGAATTACACCACAAAAGCTTCATTGCAGTATCACATGCGATCTCACGTAAATAATGGACCATGTTGGTGCAAAGTATGTCAGCGTATGTTCATTCGCGTTGATTGTTTACTACGGCACATGCGCACAAAGCATagggatgttgttttgaatattataactAGAGCAGAGATAAAAAAGCTCAAAGAACAAAATGTTATAATCGATGGCCAAGAAAACGATGAGAATGATGAAAGTGATCATAAACTATCCGAGGAAGAGATCGTGGAGGAATTTATCATTGAACATCACGATTCACCGGTAGACCAGACTGAAGAATTCGAACTCGTCGAATTGGAAAATTCCGATACAGAAGTAATTGAAAAGTCACAAATAAAAGTCGAACCAATCGAGGTACAGATAACTAGCTTATCCCAGTCAGACAGCACACCAGAATTAAGCGAGGACGAGTTAAAGACAAATATTGCACAACTATTAAATTTGCTCATTGATGAAGATACACTGTCCGATTTTGGGTGGCCCGCAGCACCAGTACATGATGTTTTGTGTGCCGTTATTGAGCAGTGCGGTCAGTCGCCAGCCGATGACCAAACTTGCCCAGACTTTGTGACCAAGCTACGTGAAAATGTAAAGCTTCTGTTCACTGTCGTCCTCGATGACGATTCAGTAAAATCAATGTTGAACAATTTTAGCGTAGATCATGTCATTTTGCATGTGCTTAAGTTGTAA
Protein Sequence: MSRRPAQTSTAVINVKINENNEIELMDEENAPDEALINEDIEIIESLEGEQIIDDQNVLVPNSDGTMSIKTRDATFVEHICGKCKKVYKTLRGLNKHLNLCRHLPWLKLPEDHTVTESLLPNNLDEDLSKIPEDVCFCCLENLETAHSGHIKCNFCPKSFKSHLNLERHLFTLHSASTKFQCSMCNATCPSQHVMDAHVRSHADGKPFACQTCAKEFTRKYHLDRHLKFTTCESGVLKQELPCHVCNRVFTRTDNLREHLRVHMGQPTRRKDYQCPYCEKSFYGSSLMNIHIRTHTGEKPFACDLCDKSFSSNGALRKHRRMHTGERPYACTECDSAFSAKETLNRHMKIHSGVRPHECTLCSKKFIQATQLKAHMFHHTGENGYKCNLCDKEYNRKSRLTLHMKFVHENEQSLSCKTCSKSFQRKDDLKRHMESHNKTKEYVCEMCDKNYTTKASLQYHMRSHVNNGPCWCKVCQRMFIRVDCLLRHMRTKHRDVVLNIITRAEIKKLKEQNVIIDGQENDENDESDHKLSEEEIVEEFIIEHHDSPVDQTEEFELVELENSDTEVIEKSQIKVEPIEVQITSLSQSDSTPELSEDELKTNIAQLLNLLIDEDTLSDFGWPAAPVHDVLCAVIEQCGQSPADDQTCPDFVTKLRENVKLLFTVVLDDDSVKSMLNNFSVDHVILHVLKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -