Bcin010100.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bolitophila cinerea
Gene Symbol
-
Assembly
GCA_010015015.1
Location
JAAAKO010007556.1:6908589-6911194[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 9e-05 0.0064 17.2 4.2 2 23 191 212 190 213 0.94
2 16 0.013 0.95 10.4 0.8 1 13 231 243 231 252 0.78
3 16 0.018 1.3 10.0 0.4 2 23 262 284 262 284 0.96
4 16 0.00019 0.014 16.2 2.4 1 23 290 312 290 312 0.97
5 16 4.4e-06 0.00031 21.4 1.0 1 23 318 341 318 341 0.97
6 16 0.019 1.4 9.9 5.1 1 23 346 368 346 368 0.98
7 16 0.00024 0.017 15.9 6.6 1 23 374 396 374 396 0.99
8 16 4.3e-05 0.0031 18.2 2.8 1 23 402 424 402 424 0.96
9 16 5.3e-06 0.00037 21.1 0.8 1 23 430 452 430 452 0.98
10 16 2.1e-08 1.5e-06 28.7 2.1 1 23 458 480 458 480 0.99
11 16 0.00019 0.013 16.2 1.8 1 23 486 509 486 509 0.96
12 16 0.00014 0.0098 16.6 1.2 1 23 533 555 533 555 0.93
13 16 1.3e-05 0.00092 19.9 1.3 1 23 561 584 561 584 0.95
14 16 3.3e-05 0.0024 18.6 0.7 1 23 590 612 590 612 0.98
15 16 6.6e-05 0.0047 17.7 2.4 1 23 618 640 618 640 0.98
16 16 0.0099 0.7 10.8 1.2 1 23 646 668 646 668 0.98

Sequence Information

Coding Sequence
ATGGAGTCACCCATCTACACGTTGGACAGAACGTGCCGTTTATGCTTACGGAATGCTGAACCAAACGAGCAAACGTATCCAATGTTTGAGCTGTTTGGTGACAACAGCCCGCAACAGTTGATTACCGAATTTGCTATGATTAATTTTaaggtAGATGCCGACGATGGACTTCCACAGCAGAGTTGTGAAGCTTGCATAAACACATTGTTGAAAATGTATGCATTCCGAAAGAACTGCGAAGATTCTCAGATTGTACTGCAGGCATTCTTTACTACAGCAGGCAGATATGAAGATACAAATGAGAAAAACGTTAAACTGGAGGATTTGGAATCACAAAACGCACCTAATTATTCGGATTTTGAGTTTCTGAACATAGAGAACGAATTCGATGGTACAATTGAAATAGAAATTATTGAAGAGCGGCTAGCACGAGAGACTGATGAGAAAGTTACAAATGAATCTTCTGACGAACTAATCGAACCCATAGAAGTAGATTTCGACTCAAGCGAAAATGAATGTGATGAAGATTGGAATGATTCAAATGAAGTGTGTGACGATGATAAACCACTTgaatgttttgtgtgttttaaatcTTATAAACGAAAGGCTCATCTGGAACGTCACATAttaaatcatcatcataataGCCAAGAATCGGTCAAAGACAACAGTAAAAAGCGTCAGTATGAGTTTATGTGCAATAAATGCGGAAAGCGATTTTCTAAACTTAATATGCATCTAGATCATGAGCGTACTGGCAATTGTGCGATGGCCAAAAATCCACAGTGTCGATTTTGCAAGGAAAATTTCGATAATGGCGACGATTTAGAGGCTCATCTGACTAAAATGCATCCACGAGACAGGCCACACATGTGTCCAATTTGCAATAAAACATTCCAAAGTGTCTCGAATCGAAACACTCATCTACAGTCTCACAACAAAGAGGATTCTTTTACTTGCGGTACATGTGGACAGGGCTTCAAAAGCAAGGTATATCTTAGTAAACACATGAAATCTGTGCATACCGTCACCAATCACCAGTGTCCGCACTGTTCGCTAAAATTCGAAAACACCGTTAAATTTGAATATCACCTAAAGTCTCACGAGCCCAACAAGAAGTACAAATGCAAATTTTGTGATAAATCGTTTCTGCAGCAACATCACTTGGCCAATCATGAGCGCACGCACACCGGTGCACGTCCGTATCTCTGTAATATATGCGGCAAAGattttaaacaaGAGTGCAATTTTAAGTTACATCTAAAGATTCATACTGGTTTGCGGCCGTTTATTTGTAATGTTTGCGGAAAAgATTTTATTCAGCGTAATTCGTTTGTAATGCACATGCGAAGACACTCTGGCGTACGACCGTATCAATGCGAACACTGTGGAAAAGatttcgTTCAAAAATCGTCGCTTACTGTACATCTGCGAACGCATACCGGCGaaagaccttacaagtgtgattCGTGTGATCGAGCCTTCGTACAAGCACAACAGTTAAAATACCATCGGCACTCGGCACACGGTGGCCCAACCACTGGCAATGTAAAGAAAGAAGAAACTAAACCCTCTTCTGATGGTCGCATATATCCATATTGCTGTCCGCTGTGCAACAAAGGATTCAAACTGCCGTCTTCGCTGTCCTCACATATGCCTACTCACAATGAGGAGCGTAAGCATGTGTGCTCACAGTGCGGAAATTCATTCAAACGTGCCGAGCATTTGCGAATCCACATAAATGGTGTACATTTGAAACAGAAACCGTACGCTTGCGATATGTGCAATAAAACGTTTGCCCAGTCCGGTGACCGGAATATTCACCGCCGCCGTCACACAGGCGAGAAACCGCACAAGTGCACCATATGTCAGAAAACGTTTCGTCTTTTGAAAGCAATGCGGGCACATCTTCGTATTCACACTGGCGAGAAACCATACTCATGCGAATTCTGCAAAATGGACTTTATGACATATACGGCGTTGGCGACGCACACCATGAAACACGAGGCCGAGTCTAGGAAAACAGGTGAACTTGTCCCTGTGCAAATTATTGAACATACGATTGATGCATCGCCATCTATCGTTAGCTTATTTAATTCACATATCATAGACAACACGTAG
Protein Sequence
MESPIYTLDRTCRLCLRNAEPNEQTYPMFELFGDNSPQQLITEFAMINFKVDADDGLPQQSCEACINTLLKMYAFRKNCEDSQIVLQAFFTTAGRYEDTNEKNVKLEDLESQNAPNYSDFEFLNIENEFDGTIEIEIIEERLARETDEKVTNESSDELIEPIEVDFDSSENECDEDWNDSNEVCDDDKPLECFVCFKSYKRKAHLERHILNHHHNSQESVKDNSKKRQYEFMCNKCGKRFSKLNMHLDHERTGNCAMAKNPQCRFCKENFDNGDDLEAHLTKMHPRDRPHMCPICNKTFQSVSNRNTHLQSHNKEDSFTCGTCGQGFKSKVYLSKHMKSVHTVTNHQCPHCSLKFENTVKFEYHLKSHEPNKKYKCKFCDKSFLQQHHLANHERTHTGARPYLCNICGKDFKQECNFKLHLKIHTGLRPFICNVCGKDFIQRNSFVMHMRRHSGVRPYQCEHCGKDFVQKSSLTVHLRTHTGERPYKCDSCDRAFVQAQQLKYHRHSAHGGPTTGNVKKEETKPSSDGRIYPYCCPLCNKGFKLPSSLSSHMPTHNEERKHVCSQCGNSFKRAEHLRIHINGVHLKQKPYACDMCNKTFAQSGDRNIHRRRHTGEKPHKCTICQKTFRLLKAMRAHLRIHTGEKPYSCEFCKMDFMTYTALATHTMKHEAESRKTGELVPVQIIEHTIDASPSIVSLFNSHIIDNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-