Bcin022678.1
Basic Information
- Insect
- Bolitophila cinerea
- Gene Symbol
- ZNF236
- Assembly
- GCA_010015015.1
- Location
- JAAAKO010000176.1:116156-120446[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1e-05 0.00072 20.2 2.0 2 23 147 169 146 169 0.95 2 19 0.0071 0.5 11.3 0.3 1 23 175 197 175 197 0.96 3 19 2.3e-05 0.0016 19.1 2.7 2 23 203 224 202 224 0.97 4 19 0.8 57 4.8 3.4 2 23 238 260 237 260 0.93 5 19 0.0014 0.098 13.5 1.1 2 23 276 297 275 297 0.97 6 19 0.00037 0.026 15.3 2.4 1 23 303 325 303 325 0.97 7 19 1.7e-05 0.0012 19.5 4.1 1 23 331 354 331 354 0.96 8 19 0.077 5.4 8.0 5.9 1 23 362 385 362 385 0.96 9 19 2.4e-05 0.0017 19.0 0.5 2 23 458 479 457 479 0.96 10 19 0.0035 0.25 12.2 2.2 1 23 485 509 485 509 0.98 11 19 0.0043 0.3 12.0 2.7 1 23 543 565 543 565 0.98 12 19 0.00011 0.0076 17.0 3.3 1 23 614 637 614 637 0.96 13 19 4.6e-05 0.0032 18.2 1.0 1 23 643 665 643 665 0.96 14 19 0.00038 0.027 15.3 0.7 1 19 671 689 671 693 0.91 15 19 0.00034 0.024 15.4 2.7 2 23 700 721 699 721 0.96 16 19 0.0031 0.22 12.4 0.9 2 23 1242 1263 1241 1263 0.97 17 19 2.8e-05 0.002 18.8 1.9 1 23 1269 1291 1269 1291 0.99 18 19 0.0019 0.14 13.0 0.3 2 23 1299 1320 1298 1320 0.97 19 19 5.5e-06 0.00039 21.0 1.7 1 23 1326 1348 1326 1348 0.98
Sequence Information
- Coding Sequence
- ATGTCGAGATCCAGTTCGATCTATTTTGGCGGCGAGGAGAGTGCCAGTGAGaatgaaaatttgttttccTGGACTTACAAAGATGTAAACAGAAGTCCTGACGTAGAACATTTGCCGTTTTCTTCCTTATCCGCTACAGATTTCAATACACACGATTCGTCATTACTTGATGAATCCGTGTGTGAGTCCAATCCGGTAAATGGTGTTGTTCACGGACAAGATAATAGTGGTGTTGAAGAATTGCGAGAAGCACACGAAAGCAATCCTTTAGCAGAAGTATACACAAACAATTCTGTTATAAAACTACTGGAACAAGATGCTTTATTCGACGAAAATGTTACCTCTGATACAGAATCAGCTCCAACTACGACCAGCTCAGAATTGGATAGGTTCAAAAAACCTTTTCCACTACCTCCTTCTTTCATTCTTGCCCCCTGGAAATGTAAGGAATGCCCAAAGTCATTTACAAAGAAGTCTCTATTGCTACAACATCAGACGAAATATCATCTGCCCGagaaacccttcaaatgtgATATTTGCTCAGATACATTTGCTGATCAGGAAAACTTTGAACTCCACAATTCAATACATCGCAAGGCTCCACTGCAATGTCCTAAATGTGAAAAAAAGTTTAGTCGCCATTCCAGCTTTCAAGGACACATACTAACACACTACAAAAAAgactatttatctttaaatagagaaaaaatacaatgCAAAAACTGCTCAATGTCTTTCCAAAACGAGAGGCAGCTAAAATGTCACAGGATCAGAGAGCACTCCactcaaaagaaaaacaaactacCAGCGAAAGCCGAATTGATCAAATGTAGATTCTGTGATAAAAGATATAACAAGCCTGCTCTCGTTCAAAAACACGAGCGAACACACTTGAATATTCGTCCGTTTGTATGTCGGATTTGTAATAAAGGATTCTTTCAGAAACACACACTTGAAATTCATCAGGTACGGCACACCGGTATAAAAGCGTTTAAGTGTAGCACGTGTGATCAGTCATTCACTCAAAAGGGAAATCTCCGAATTCACATTTTTCGATGTCACAACGAAACAAATGATCATAAATTCTGTTGTTCTAATTGCCCGTGCTTTTTCAAGACAATCGGAGCTTTAAATGCCCACATCAGCAAGTGTCACAGTAACGAGGTAATCAAAACCACTGAGAATCCTGAAGATGATCCTGTACTTGACAGTGAAACAGTTCTCGACCAATTGAAACAAATCAAGCGGACTGTCGTTTCCTGTGAAGTTAATCCGGAGGCAATAGACCTCAATTCAATTCTCCCACAGCCAGAATCGGTTATAACACAACAAGAAGTTAATCAGGTTGTCATCAAGGATCAACGATTTCTAATCTGTTCGTATTGTCCTAAGAAATTTCGAAAACCTACCGATATGATGCGTCACGTTCGAGTGCACACAAATGAGAAACCGTTCAAATGTCCGGAGCCAGGTTGCCATCGATGTTTTGCGGTCAAAAACACAATGACGGTACACAGTAGAGTACACGAAAAGAAACGCGAGAAAGCACAAGAAAAGTTCCTCGAGATCGAACGATCTGAAAATGTAACAGATGAAACAGCTTCTGCGACACCCGATAGGATTGTGTATTCATGTGACCAGTGCCCCAGTAAGTTTTTCACAATAAAATCACTAAAGCGTCACACGAGAAATCATGCACGAAAAACGGTAAAAGAAGCAGAGCTAGATTTTGACATTGAAATGAAAGATCCCGTTATGCTGGAAGATTCCGAAGAAGATTTATCAGAGCAAACCGTCATCCAGCAGCCAATGAAACCGAAGGAATTGGAAATTCGGAATTTTCCTTGTGAGTTTTGTGGGCATAAATTCAAGCGGAAAGCTCATTTGATTGACCACGTAAAAATTCGACACATGGGCGTTAGAAATCATAAATGCGATATATGTGGAACATCTTTCGGACAGAAAGCCGTGCTAAAGCGACACATCCTGTTTCATACCAAAACCAAAAGATTCAAATGCAATAAATGCGATAAGATGTTTGTCACagGTTATGAATTAAAGGTGCATGACAATGTGCATACAACGAAGCGCCTTGTTATGTGTCCGTACTGTCAGAAGACTTTCAAAAGTTTGTCCAGTTGTCGGGCTCACATGCAGTATCACAAAAAAGACATCAAACGGCAAATAAGCGAGCAGGTTAATTCAGGCGTTTTAGTCATCAAATTCGATGAGCCCCAAAATAGTTCCACCGAATTTTCAGCCGATGCTGTTGAAGAACAAACATTTGAGTTTGTTGACGTTGAAGAAAGTAATGTTCGCGTGGAACAAAATAATGAGTCTGCGATTATCAATGACTCAGCCAATACTGCCACTTCCGCAGAGCCATCCGTagagtattttttgttgattacaAATCCGATGAGTAACAACGTGAAATTACTACCCAATGGAACATTATGTATAACAGGTAATGCCATAACATCGAATCTAAGTGGAAACAATGAGAACAGTACACTCGAATCTGAACATAATTCTGAACTGGTCGAAGATTCCAAAGTATATGAAGAAACCAATGAATCAACAAGCCGTGAATTTCAACTAGACGAAGAGCACAACGAAAACATCGAAGAAATGACTATAAAATATGAGACTGCTCGTCAGGAACTTGATGCACGTCTAAATGATCAAACATACCACCTGATCGAGAATTTAGACGAAATCGTGCTTgaaaatactgataataaaGATCATAATCAACAGAACAATGTTGTGGCTGACACTAACGACACAACATATAAACTGATTAGAGAGTTAGGTTTGATAGATGACGTCGACGATACTCTGATAAGTACTACAGCTCCGCAAATCATTGAAGATACTGAAAGCGTACAATACGAACAAAACGATAGTATTTTAGATGTTAGCTTTACTCCAAGTTTCGCCGAAGAATTCAATAATCACGACTATCAATTGAGCACAGGTATGGTTGGAATGGAAGTGGAGCACAATGAACAGGTGTTCTGTTTGTCTGAATCAATCGATGATGATCAATTAGCACTGGAAACGCATGAGAAGTTTGAGGATTTGGCAAGAAGAATATCTCGTTTACCTTCATCGGACAACACAGGCTTATGCTCTACGGTTCACACAGATCAATGTATTCCTCACGAAAAAATCGAAGATTTAGCACGTAGAATTGCACGTCTACGTTCAGTCGAGGAGTTCATTGTGCCAGATAAAAGCATACACCAGATGGATGAACAAGAGCACTTTGATGATTCGGCCCAAATGGCATCTGTAGACGAATATGTTTCGCCGGGCTTCAGTGAACTCATCAGCAATCCGTCGCCTTCTCTTATTAACGGTGAATATGAAATTGTACAGGAGGGTAATATTTATGATATCAGTAGTGGTAACACAATTGATCTTGCCGTATACTCTGATACTCAGAGTATATGTCCAGATCTAGCATCACAAAATATCGTTCCGTCTAAACCTCTACCACAAATCCAATGTATAGTCGATATGACACAACTGCCCGAAGTCACACCAGATCCTTACTTGAATAACAATGATTTACCTCGAATATCATTGGACATTCGTTTCAGTAGCGGCCTCGATCCGGATATACCATTCGAAGCTGTTTACAAGATTGATTCCGCCACCGTAACCAACTTAATCCAAAAGAATCGTACTACAAAATCCACGTACAAGGAATCTCTGCAATGCCAAACGTGTAAACGATTATTTCAGAAACCAATAGACTTGGAACGACACGAACGCACGCATACCGGTGCACGTCCGTTCCAGTGTCCGAAATGTCCAAAAGCCTTTGCGCTGCGTTGCACGCTAACCAATCACTTGCAAACACACGAGATCGTCAAAGAGAAGGTCAGGTGTCACGTGTGCTACAGTATGTACGCGTCCCGAGCCAGTCTGGCCGTTCATATGCGCATTCATACGCGCGAGAGACGGTTCAAGTGCAACTTATGCCCGAAAACGTTTCGCACCAGCGGCCACTTGAGCGGACACATTCTGTCGCACCGCAAGAAATCTAAGAAGTCTAAAAGTACACGTTCGATTCTGGCACAAACGCAACGCAGCAATATGCTGTTGCTGGAAGACATCGTGAATGAGGCTACGGCTAATCTAGCCAGCGGCAACTGA
- Protein Sequence
- MSRSSSIYFGGEESASENENLFSWTYKDVNRSPDVEHLPFSSLSATDFNTHDSSLLDESVCESNPVNGVVHGQDNSGVEELREAHESNPLAEVYTNNSVIKLLEQDALFDENVTSDTESAPTTTSSELDRFKKPFPLPPSFILAPWKCKECPKSFTKKSLLLQHQTKYHLPEKPFKCDICSDTFADQENFELHNSIHRKAPLQCPKCEKKFSRHSSFQGHILTHYKKDYLSLNREKIQCKNCSMSFQNERQLKCHRIREHSTQKKNKLPAKAELIKCRFCDKRYNKPALVQKHERTHLNIRPFVCRICNKGFFQKHTLEIHQVRHTGIKAFKCSTCDQSFTQKGNLRIHIFRCHNETNDHKFCCSNCPCFFKTIGALNAHISKCHSNEVIKTTENPEDDPVLDSETVLDQLKQIKRTVVSCEVNPEAIDLNSILPQPESVITQQEVNQVVIKDQRFLICSYCPKKFRKPTDMMRHVRVHTNEKPFKCPEPGCHRCFAVKNTMTVHSRVHEKKREKAQEKFLEIERSENVTDETASATPDRIVYSCDQCPSKFFTIKSLKRHTRNHARKTVKEAELDFDIEMKDPVMLEDSEEDLSEQTVIQQPMKPKELEIRNFPCEFCGHKFKRKAHLIDHVKIRHMGVRNHKCDICGTSFGQKAVLKRHILFHTKTKRFKCNKCDKMFVTGYELKVHDNVHTTKRLVMCPYCQKTFKSLSSCRAHMQYHKKDIKRQISEQVNSGVLVIKFDEPQNSSTEFSADAVEEQTFEFVDVEESNVRVEQNNESAIINDSANTATSAEPSVEYFLLITNPMSNNVKLLPNGTLCITGNAITSNLSGNNENSTLESEHNSELVEDSKVYEETNESTSREFQLDEEHNENIEEMTIKYETARQELDARLNDQTYHLIENLDEIVLENTDNKDHNQQNNVVADTNDTTYKLIRELGLIDDVDDTLISTTAPQIIEDTESVQYEQNDSILDVSFTPSFAEEFNNHDYQLSTGMVGMEVEHNEQVFCLSESIDDDQLALETHEKFEDLARRISRLPSSDNTGLCSTVHTDQCIPHEKIEDLARRIARLRSVEEFIVPDKSIHQMDEQEHFDDSAQMASVDEYVSPGFSELISNPSPSLINGEYEIVQEGNIYDISSGNTIDLAVYSDTQSICPDLASQNIVPSKPLPQIQCIVDMTQLPEVTPDPYLNNNDLPRISLDIRFSSGLDPDIPFEAVYKIDSATVTNLIQKNRTTKSTYKESLQCQTCKRLFQKPIDLERHERTHTGARPFQCPKCPKAFALRCTLTNHLQTHEIVKEKVRCHVCYSMYASRASLAVHMRIHTRERRFKCNLCPKTFRTSGHLSGHILSHRKKSKKSKSTRSILAQTQRSNMLLLEDIVNEATANLASGN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -