Bcin022080.1
Basic Information
- Insect
- Bolitophila cinerea
- Gene Symbol
- -
- Assembly
- GCA_010015015.1
- Location
- JAAAKO010000408.1:18543-23209[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00022 0.016 16.0 4.7 1 23 243 265 243 265 0.98 2 18 0.057 4.1 8.4 3.3 1 23 272 294 272 294 0.98 3 18 0.00086 0.061 14.2 0.1 1 23 300 322 300 322 0.97 4 18 1.5e-05 0.0011 19.7 1.6 1 23 327 349 327 349 0.98 5 18 6.2e-05 0.0044 17.7 0.7 1 23 355 377 355 377 0.97 6 18 5.1e-06 0.00036 21.2 1.5 1 23 383 406 383 406 0.97 7 18 0.063 4.5 8.3 0.8 1 23 412 434 412 434 0.98 8 18 0.0024 0.17 12.7 0.0 1 23 440 462 440 462 0.95 9 18 0.0001 0.0073 17.0 3.4 1 23 467 489 467 489 0.97 10 18 2.6e-05 0.0018 18.9 0.5 1 23 495 517 495 517 0.95 11 18 2.4e-05 0.0017 19.0 3.1 1 23 523 545 523 545 0.99 12 18 1.1e-05 0.0008 20.1 2.0 1 23 551 573 551 573 0.97 13 18 0.00031 0.022 15.6 6.3 1 23 579 601 579 601 0.98 14 18 3.2e-05 0.0023 18.6 1.8 1 23 808 830 808 830 0.98 15 18 0.00015 0.01 16.6 7.2 2 23 835 857 834 857 0.97 16 18 0.066 4.7 8.2 1.3 1 23 861 883 861 883 0.97 17 18 0.0029 0.21 12.5 3.6 1 23 889 911 889 911 0.94 18 18 0.00034 0.024 15.4 0.7 2 23 918 939 917 939 0.95
Sequence Information
- Coding Sequence
- ATGGTTGCGTCCGTTTTAAATTCACTTTCCCacaaaatattatgtagatCCTGTCTAAGTGAACTAGAATCCAAGGAAGTACACACGATTTTCATGTCTGGAAACATATTGGGACAGATAACAAAACTTTCAGACATGCTATTTTATTGTACGGGATTACGGtttACGGCAGATGATGGAATGCCTGGCGGAATATGCAACAAATGTATTGTTCTTGTAAGCAAAGCCTATGCATTTAAGCACCAATGTCTGAAATCAGACGAGGTTCTGCGAGTCAgactgcaaattaaaaaaagtccaaGTGAAGATGAAAAGGTTGATGATGAACTGCATGAAATTGAATATCTAAATGTTGAGCCGGATACTCAAGAGGATTATGGAGACATGTTAACGTACATCGATTATTCGTATTCTGCTGTTGAAAAGGCTGACAaagctcaccaaaaaaatgacGTTTCCAATGAATACAAATCTTACGTATTTATAAAAGAATCTAAACACATTGAAGAAGATAAAGATGAAGACGgttttgaagtaaaaaaaaatgcagttactgctataaaatttgaagaaaatcatCAAAACGACAAGTATGAGTACAAGCAACAATCGCTAAACTTTGAAGATCAGCAGCAAGCGACTTCTTCTGTTGACGGagatcaaataacaaaaaagatgGTATACCGCAAAAACACTAATCGATCTaaagttaaacaaaatgtaCCTTTCAAGTGTGACCAATGCAATAAGCAATTTCGCTTTTACAGTAATATGATGAagcataaaaaaatccatttattacCACCACAACAATATAATTGTGATTTATGTGAAAAAGTGTACACCTGTAAAAGATCGTACCAATTACATATTCAGAGTCATTCGGACGAAACGCCATATATATGCGTTGAATGCGGTGCAGGCTTTAAGACGAGCAACGCTTTAAATTATCACAAGATTTCACATAGACCTAATCCCCACCAGTGCAAACTGTGTAATAAATCTTATCGCCAGGCTGCCGCGTTAAGAAGTCACCTACTATCGCACACAGGAGAAAAGCTGTTCTTCTGTGACATTTGCGGCAAAGGAATGACTCAGAAAAGTGGATTTAAAaaacataTGCTGATACACACTGGCGAGAGACCTTACCCGTGCAATCTATGTGACAAGCACTTTCGCTATTCCAGTGGCCTGATGGTTCATAGAAGATCCGCCCATTCGGAATCTCCACCTTTCAAGTGTGTATCTTGTGCAGAAGTGCTAAGCAATTACAGATCgtacaaaaaacacattcaatTGCATTCGGACGAAACGCCATATCTATGTGCCGAATGCGGTGCAGGATTTACGACAAGCGAAGATTACGATGTTcacataattaaacataatataaagaGGCACACGTGCGAGGTGTGCAACAAAACATACCGAAAGACTAGTACGTTACGAAATCACCTCATATCGCACACAGGAGATAAACCGTTTTTGTGTGGCATTTGCGGCAAAAGAATGTCTCAGAGAAGTGGACTTAATaaaCATATGCTAACACATACTGGCGAGAAACCATACCAATGCAATCTATGTGACATGCACTTCCGGTACTCCAGCAATATGATAAAGCATGCAAGATCTCATACGGGTGAACGTCCGTATATGTGCAAgATTTGCAACAAAACATTTACTGGCAGCGAGACATTGAAAAAACACACGTTTATTCACACCGGAGAGAAACCGTTTAACTGTGAGTTTTGCAATAAGAACTTCAATCGTAAGTGCAGTCTAAATGTGCACAGAAAAACTCACACGGGTGAAAAAAATCACACCTGCAAAtttttagaagATGACGGAATGCCCGCAGGAATATGCATCCAATGTATTGTACAGTTAAACAAAtcatatacattcaaaaaacaaTGTCTAATATCTGACGAGGTACTGCGAGACAGATTGCAGAAAAATAAAAGCTTCGCTGAAGATCAAGTGGTTGGTGAAATGAATGATGCTGAAAATCTTCAGATAGAGCAGGAAACTCAAGAGGATAATGCCTTGGTAACTCAAAACGATTATTCGTATCCGGCTGTTAAAGATAAAGTCAAAGATCACCATCAAGACAacatttccaataaatataattggaacAAATTTATGACAGAACACATTGAAGAAGAAGAATCATGTTATGAGTTAGTCTCTGTTATAAAAATCGAGGAAAATTGTCAGATCGATGATGAGTACGGGCAGCATTTGCCTAACCTGAAGAATCAGAAGCAAGGAACTTTGTCTGCTGATGGGAATCAAACAACAACGAAAAAACTTCAAAACTTCAGTGCAGGATTTGAGACGAACCAAGCATTAATTTCGCACAAGGCTATACATAACACAAACAACTCGACCCTACTAATGCACACAGGAGAAAACTCATTCTCGTGtgacatttgcaaaaaaacaattagtaaTAAAAAGAGACTTGAAAAACATATGCTAACACATAgaatcaaaaacaaatgtaacTTATGTGACAAGTACTTTTGCCATTCCAGTAGCCTGAAAAGGCATAAAAGAATAAATCATGAATATCCGTTTATTTGCAAGATTTGCAAACAAAAATGTCAGGGCAAAATAGCATTGGATAATCATATGGTTACTCACACCGCAGAGAAACCGTTTAGCTGTAAAATCTGCAATAATACCTACCATCGTAGAAGCAGTCTAAACAGGCATAATATTCTTCACACGGGTGATAATTTACTCAAGTGCAAAGAGTGCAACAAATCGTTTAACTCGTATATCGCGTTTCAAGAACACCTAGGCTCGCACAAAATAGAAACACAAAGAAATGGCAAAGAAATGGCTCAGGAAACTGCAATTAAAGTGagttaa
- Protein Sequence
- MVASVLNSLSHKILCRSCLSELESKEVHTIFMSGNILGQITKLSDMLFYCTGLRFTADDGMPGGICNKCIVLVSKAYAFKHQCLKSDEVLRVRLQIKKSPSEDEKVDDELHEIEYLNVEPDTQEDYGDMLTYIDYSYSAVEKADKAHQKNDVSNEYKSYVFIKESKHIEEDKDEDGFEVKKNAVTAIKFEENHQNDKYEYKQQSLNFEDQQQATSSVDGDQITKKMVYRKNTNRSKVKQNVPFKCDQCNKQFRFYSNMMKHKKIHLLPPQQYNCDLCEKVYTCKRSYQLHIQSHSDETPYICVECGAGFKTSNALNYHKISHRPNPHQCKLCNKSYRQAAALRSHLLSHTGEKLFFCDICGKGMTQKSGFKKHMLIHTGERPYPCNLCDKHFRYSSGLMVHRRSAHSESPPFKCVSCAEVLSNYRSYKKHIQLHSDETPYLCAECGAGFTTSEDYDVHIIKHNIKRHTCEVCNKTYRKTSTLRNHLISHTGDKPFLCGICGKRMSQRSGLNKHMLTHTGEKPYQCNLCDMHFRYSSNMIKHARSHTGERPYMCKICNKTFTGSETLKKHTFIHTGEKPFNCEFCNKNFNRKCSLNVHRKTHTGEKNHTCKFLEDDGMPAGICIQCIVQLNKSYTFKKQCLISDEVLRDRLQKNKSFAEDQVVGEMNDAENLQIEQETQEDNALVTQNDYSYPAVKDKVKDHHQDNISNKYNWNKFMTEHIEEEESCYELVSVIKIEENCQIDDEYGQHLPNLKNQKQGTLSADGNQTTTKKLQNFSAGFETNQALISHKAIHNTNNSTLLMHTGENSFSCDICKKTISNKKRLEKHMLTHRIKNKCNLCDKYFCHSSSLKRHKRINHEYPFICKICKQKCQGKIALDNHMVTHTAEKPFSCKICNNTYHRRSSLNRHNILHTGDNLLKCKECNKSFNSYIAFQEHLGSHKIETQRNGKEMAQETAIKVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -