Bcin002277.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bolitophila cinerea
Gene Symbol
-
Assembly
GCA_010015015.1
Location
JAAAKO010000756.1:13472722-13475268[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 5.8e-05 0.0041 17.8 0.4 1 23 151 174 151 174 0.94
2 15 1.9e-05 0.0013 19.4 1.8 1 22 179 200 179 202 0.91
3 15 6.3e-06 0.00044 20.9 2.9 2 23 215 236 214 236 0.97
4 15 0.54 38 5.3 0.0 1 19 252 270 252 271 0.96
5 15 9.5e-05 0.0067 17.2 0.7 1 23 402 424 402 424 0.98
6 15 2.3e-08 1.6e-06 28.6 2.9 1 23 433 455 433 455 0.99
7 15 0.00035 0.025 15.4 4.1 1 23 461 483 461 483 0.95
8 15 0.0006 0.042 14.7 4.4 1 23 489 512 489 512 0.94
9 15 7.2e-07 5.1e-05 23.8 0.5 3 23 524 544 523 544 0.98
10 15 7.9e-05 0.0056 17.4 1.2 1 23 549 572 549 572 0.95
11 15 3e-06 0.00022 21.9 0.4 1 23 578 600 578 600 0.96
12 15 1.8e-06 0.00013 22.6 1.0 1 23 606 628 606 628 0.98
13 15 3.2e-06 0.00023 21.8 1.1 3 23 636 656 634 656 0.96
14 15 4.3e-06 0.0003 21.4 0.8 1 23 662 684 662 684 0.99
15 15 0.0014 0.1 13.5 0.9 1 23 689 712 689 712 0.97

Sequence Information

Coding Sequence
ATGGATATTACTCGTGTGTGTCGAACGTGCCTCAAGGAAAACCTCGAAATGAAATCTATATTCGAGGTTCAGCCGTCTGACACTTCGCTGTGCAACATGATTGTGGCGTGTACAAAAACCATGatatcagaAGTAGACGGCCTTCCCAGTCAGATTTGTTCCGAATGCCATGACAGTGTTATGGCTTCGTATTTATTCAAGCAACAGTGCGAGGATGCATACAAAACGCTGAAGAGTTTAGTGTGTAATACCAATGTACAATTTGATGAACTAGCTGATGCAAAGACTTCCTCTGTTTCCATCAAAGACATCGTAATAAAAAACGATCAAAAAGATTTGAATATACTTGATTTTGACTCGGATCTAGGAGATATAAAGGAAGAGacaagtttttgtttaaaaaacatgaacCCCAACGAAAAATGCTGTCAGACTGAGGAGATTTTATATTATCCTTGTGAAATGTGCGACTATAAGTTTACCAATGAGGATGCTCTCAGGATCCATCGATCTCAGCAGCACTCTGATTTCGGATACAAATGCCGTGTTTGCTCGAAATCTTATACTCGCCTAACGCATTTGCGTCGTCACATTGGAGCCATACATCCGGATGAAACTATTTCAAAAGctcttgaaaatatttcatgCACGGTATGCAATAAACTGTTCACTCGAATGGATCACTTGAAAAGACACATGCTCACACATCCCGAGGGTTCGGCACTGTTGGCATCCACGACGGATGCCGAAGCGTATCGATGTGATATTTGTGTACAGTGGTTTCCAACGGAAGATGAACTGCAAATGCATGAACCTTGTTTAAAACCTGATATAAATGTCACAGATTCTTTTGTCGCTGATAGTTTAGCAGAAGTTACCCAGATTGACGCAAATGATattcaatatgtttttgaaacaaaCACAAGCCTTATTGTGGGTCCGCCCAAAGAAGAAATTAGCTCTGCAGCACTAGAGGAGATTAAAGAAGACTACGAGGATCCGGATGATTTAGATTTTGATGCCAACGATCTGGTGTACGATGATGTTAACTCTAGCAGTAGCAGTAGCGGCAGAAGCGAAGATGAAGTGTCTAAACcagaaaaatcgaaaattgtTTTACCAGAACTACAAGTAAAAAGACCACGTGGACGACCTAAGAAAATTCCACCTAAATCAACAAACAATTCTGAGTTAGTTGATGTATTCTCTTGCGGTAAATGCAAGCGTGAGTTTgcgaattcaattcaatttgagAAGCACATTGAGATGCATGAGAAATCATCCTCATCTTATGTGTATCAGTGTGAAGAGTGCGATAAAGTCTTTTCTCGATCCAATCACCTTAAACGACACCTGCTCACACATTCCGGCATTAAACCGTTTGCTTGTGAAGTTTGCAACAAAAAGTTCACACGCGTTGATCACCTGAACATTCATCGTTACCATCACTCCGAGGTAAAACCACACAACTGTGACCTGTGTCAAAGGGGTTTTACACGTGCCGAACATTTACGTAAGCACAAGGAATCTAGACATGGTGGAAAGGTACCATCTGCAAAAACTGAGATTTGCGATATCTGTAAAAAAGGTTTCACCACACCAAAATACCTCCAGGTTCATATGCGTTCGCATACAGATCGTCAGCATGCCTGTAAGTTTTGCGATGAAAAGTTTTCGTTAAAGTCTGAACTGAATGAGCACATGGCCAAGGTTCACGTAAACGAACGTCCATTTTTGTGTTCCGAATGTGGATTACGGTTTGTTCGTAACGATTATTTAGTTATACATATGCGACGTCACAAAGGTGAGAAACcgtataaatgtaaatactgTAACAAGGGTTTTCCGCGTGCCACCGATCTTACCGTGCACGAGCGATACCATACTAACGAGAAAACACACTTGTGCACAACCTGTGGCAAAGGATTTCAAAGAGCTTATAATCTATTGGTACATATGCGTGTGCACACTGGTGAGAGACCATATCAATGTCCACACTGTGTGAAAAGCTTTGCGCAGGGTAATGATTTAAAGGCACACGTACGACGTCACACAGGAGAAAGATACAAATGTGACGTATGCGGTGACGGATTCATACAGGGCTATCATTTGACACAACACAAGCGTAACGTGCACGGTATCGATATGAAGTCACACATACGTCGAGTGGAAAAAATTACAAAGACATCATCGAAAGATTCGCAACATCAAGCAGTACTTGAAGAGGATACCGATGAGCAGCATGTTAAAGAAGAACATACGGTACAACCGCATGGTATATTTCCGGATACTGTTGATGTTCAAGATGAAATAAAGTGTGAACCGCATGTTCTGCAAATGAACGAAACGTATTTACAGGACGAGGACTCGGAGTCTTCGTTGACATATCActag
Protein Sequence
MDITRVCRTCLKENLEMKSIFEVQPSDTSLCNMIVACTKTMISEVDGLPSQICSECHDSVMASYLFKQQCEDAYKTLKSLVCNTNVQFDELADAKTSSVSIKDIVIKNDQKDLNILDFDSDLGDIKEETSFCLKNMNPNEKCCQTEEILYYPCEMCDYKFTNEDALRIHRSQQHSDFGYKCRVCSKSYTRLTHLRRHIGAIHPDETISKALENISCTVCNKLFTRMDHLKRHMLTHPEGSALLASTTDAEAYRCDICVQWFPTEDELQMHEPCLKPDINVTDSFVADSLAEVTQIDANDIQYVFETNTSLIVGPPKEEISSAALEEIKEDYEDPDDLDFDANDLVYDDVNSSSSSSGRSEDEVSKPEKSKIVLPELQVKRPRGRPKKIPPKSTNNSELVDVFSCGKCKREFANSIQFEKHIEMHEKSSSSYVYQCEECDKVFSRSNHLKRHLLTHSGIKPFACEVCNKKFTRVDHLNIHRYHHSEVKPHNCDLCQRGFTRAEHLRKHKESRHGGKVPSAKTEICDICKKGFTTPKYLQVHMRSHTDRQHACKFCDEKFSLKSELNEHMAKVHVNERPFLCSECGLRFVRNDYLVIHMRRHKGEKPYKCKYCNKGFPRATDLTVHERYHTNEKTHLCTTCGKGFQRAYNLLVHMRVHTGERPYQCPHCVKSFAQGNDLKAHVRRHTGERYKCDVCGDGFIQGYHLTQHKRNVHGIDMKSHIRRVEKITKTSSKDSQHQAVLEEDTDEQHVKEEHTVQPHGIFPDTVDVQDEIKCEPHVLQMNETYLQDEDSESSLTYH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-