Bcin001665.1
Basic Information
- Insect
- Bolitophila cinerea
- Gene Symbol
- -
- Assembly
- GCA_010015015.1
- Location
- JAAAKO010000756.1:6500346-6501224[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-09 3.4e-06 27.0 0.0 4 43 39 79 36 81 0.89 2 2 3 6.3e+03 -2.7 0.0 2 11 160 169 159 169 0.83
Sequence Information
- Coding Sequence
- ATGGAAACGTCTACACACGCCAGTTACCCTGGTGATACTAGAGGCATGTTTCCGTCTTATGGCGTAAAACAAGAGAAGCCCGAATGGAAACGCTACAAGAAGTACACAAGCTCAGACATGATAGCAGCTATTGATTGCGTTGAAACCACCGGAATTAGTGCATCAAAGGCATCTAAACAATTTGGTGTTCCATGCCGAACACTGTACGACAAAGTACAAAAGCGAAAGAGTGCTCTAAATCGATCAAATGGTAATATTTCCCGTCCAGCAAAGAAGTCTTCATCAGGCAATGCAGGAAACAATGGCACAGGCATTAGTAGTGGATATGACAACCGTCATGCAGCCTTCCCATATGGTCTTAGTGGAGCACACACAGCATACATGTCACCAAACGATTCAATGGAACGAGATGACCTGGACAATCACCAGCAACATTTATCCACACTCATGGCAAATCCGGTTGCGGCACTTTTAGATCCAACATTTTTCCAAAAAGCTCTTGAAGCACGCGGATATGATTACGCAACAGCCGCTGGTCGTGAAGCATTACAAGCAATGGCACGGGCAGCTGCCGAACACTCTGTGAAACACCACTATGCACACAGAAGTCCTAGTGGCCACTTGATGGATACACCACCAAGTGAGAATCGTCAGAGTCCTTTGAATGAGTCAATCAAGCATCCAGACAGTGTAACGGATCTATCAATGTCTGCTATGTCACAACGTGACGCAGAAGAACCCTCAAgttcaccaccaccaccaccaccaccgccatcTCAACAGATCGGCGTCATTGTTCCGGCTCCTATGTCAAAGATGATGCCAGCTGCGTTCAGTGAAATTAAACGTGAAATGATGGTTGAAGACGATCTCAATTGA
- Protein Sequence
- METSTHASYPGDTRGMFPSYGVKQEKPEWKRYKKYTSSDMIAAIDCVETTGISASKASKQFGVPCRTLYDKVQKRKSALNRSNGNISRPAKKSSSGNAGNNGTGISSGYDNRHAAFPYGLSGAHTAYMSPNDSMERDDLDNHQQHLSTLMANPVAALLDPTFFQKALEARGYDYATAAGREALQAMARAAAEHSVKHHYAHRSPSGHLMDTPPSENRQSPLNESIKHPDSVTDLSMSAMSQRDAEEPSSSPPPPPPPPSQQIGVIVPAPMSKMMPAAFSEIKREMMVEDDLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00211556;
- 90% Identity
- -
- 80% Identity
- -